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SCNpilot_expt_1000_bf_scaffold_6636

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6636_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..422
DNA (420bp) protein (140aa)
Lipase class 3 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4R8_9GAMM
Lipase class 3 {ECO:0000313|EMBL:EIL94459.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative lipase family protein
SCNpilot_expt_1000_bf_scaffold_6636_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(428..991)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037922C9
Uncharacterized protein {ECO:0000313|EMBL:AHG92491.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6636_3
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1060..1587)
DNA (528bp) protein (176aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSM9_9GAMM rbh
methionine-S-sulfoxide reductase rbh
SCNpilot_expt_1000_bf_scaffold_6636_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1584..2042)
DNA (459bp) protein (153aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
methionine-R-sulfoxide reductase (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
methionine sulfoxide reductase B n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003797377
SCNpilot_expt_1000_bf_scaffold_6636_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2142..2966)
DNA (825bp) protein (275aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01967}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01967};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01967}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD-dependent protein deacetylase n=1 Tax=Rhodanobacter thiooxydans LCS2 PF3_9GAMM">RepID=I4WPF3_9GAMM rbh
NAD-dependent protein deacetylase, SIR2 family
SCNpilot_expt_1000_bf_scaffold_6636_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3052..3501)
DNA (450bp) protein (150aa)
Alkyl hydroperoxide reductase subunit F n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMG3_9GAMM
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:EIL88404.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
alkyl hydroperoxide reductase, F subunit
SCNpilot_expt_1000_bf_scaffold_6636_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3467..4624)
DNA (1158bp) protein (386aa)
Alkyl hydroperoxide reductase subunit F n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMG3_9GAMM
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:EIL88404.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
alkyl hydroperoxide reductase, F subunit
SCNpilot_expt_1000_bf_scaffold_6636_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4806..5369)
DNA (564bp) protein (188aa)
Peroxiredoxin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMG4_9GAMM rbh
Peroxiredoxin {ECO:0000313|EMBL:EIL88405.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
peroxiredoxin
SCNpilot_expt_1000_bf_scaffold_6636_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5544..6863)
DNA (1320bp) protein (440aa)
Sodium:dicarboxylate symporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW49_9GAMM rbh
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:EIL91440.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Na+/H+ dicarboxylate symporter rbh
SCNpilot_expt_1000_bf_scaffold_6636_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7017..7901
DNA (885bp) protein (295aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylisocitrate lyase (EC:4.1.3.30) rbh
2-methylisocitrate lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV6_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_6636_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8005..9099
DNA (1095bp) protein (365aa)
Citrate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WV90_9GAMM rbh
2-methylcitrate synthase/citrate synthase II rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_6636_12
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9166..9378)
DNA (213bp) protein (71aa)
Cro/Cl family transcriptional regulator n=1 Tax=Pseudomonas tolaasii RepID=UPI0003634733
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:KGE69442.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
cro/C1-type HTH DNA-binding domain protein
SCNpilot_expt_1000_bf_scaffold_6636_13
unknown

Not on your lists

comp(9378..9959)
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6636_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10100..10789)
DNA (690bp) protein (230aa)
Integral membrane protein, YjbE family n=1 Tax=Rhodanobacter denitrificans RepID=I4WV88_9GAMM rbh
integral membrane protein, YjbE family rbh
Integral membrane protein, YjbE family {ECO:0000313|EMBL:AGG88691.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_6636_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11064..12515
DNA (1452bp) protein (484aa)
2-methylcitrate dehydratase {ECO:0000313|EMBL:EIL99394.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EIL99394.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-methylcitrate dehydratase (EC:4.2.1.79) rbh
2-methylcitrate dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV3_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_6636_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12827..12994
DNA (168bp) protein (56aa)
Outer membrane protein/peptidoglycan-associated (Lipo)protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VP96_9GAMM
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:EIL89037.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
outer membrane protein/peptidoglycan-associated (lipo)protein
Displaying 16 items

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