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SCNpilot_expt_1000_bf_scaffold_2071

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2071_1
unknown

Not on your lists

2..124
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2071_2
unknown

Not on your lists

comp(121..285)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2071_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

856..1134
DNA (279bp) protein (93aa)
UPI0003CE7F6A related cluster n=1 Tax=unknown RepID=UPI0003CE7F6A
Transposase {ECO:0000313|EMBL:EYR78526.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transposase
SCNpilot_expt_1000_bf_scaffold_2071_4
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1505..1807)
DNA (303bp) protein (101aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Burkholderia graminis C4D1M RepID=B1GAV9_9BURK
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EDT06723.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2071_5
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1862..2377)
DNA (516bp) protein (172aa)
Dimethylmenaquinone methyltransferase n=1 Tax=Burkholderia graminis C4D1M RepID=B1GAV8_9BURK
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:EDT06722.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2071_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2651..3664)
DNA (1014bp) protein (338aa)
Zinc-binding alcohol dehydrogenase family protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1GAV7_9BURK rbh
NADPH:quinone reductase {ECO:0000313|EMBL:KJC46336.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
zinc-binding dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2071_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3810..5000)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000369FBE9 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig186, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44202.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Peptidase rbh
SCNpilot_expt_1000_bf_scaffold_2071_8
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5113..5649)
DNA (537bp) protein (179aa)
oxidoreductase; K09024 flavin reductase [EC:1.5.1.-]
Flavin reductase domain protein FMN-binding n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9I8_9BURK
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:EDT07179.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
SCNpilot_expt_1000_bf_scaffold_2071_9
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5714..6928)
DNA (1215bp) protein (405aa)
pigment protein; K16047 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase subunit HsaA [EC:1.14.14.12]
Acyl-CoA dehydrogenase type 2 domain n=2 Tax=Burkholderia graminis C4D1M RepID=B1G9I7_9BURK rbh
Acyl-CoA dehydrogenase type 2 domain {ECO:0000313|EMBL:EDT07178.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
SCNpilot_expt_1000_bf_scaffold_2071_10
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7083..7724
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9M3_9BURK rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDT07209.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2071_11
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7785..8987
DNA (1203bp) protein (401aa)
Acyl-CoA dehydrogenase type 2 domain n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9I6_9BURK rbh
Acyl-CoA dehydrogenase type 2 domain {ECO:0000313|EMBL:EDT07177.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
pigment protein
SCNpilot_expt_1000_bf_scaffold_2071_12
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9199..10278
DNA (1080bp) protein (360aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9L1_9BURK rbh
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:EDT07197.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
rbsB; ribose ABC transporter periplasmic protein; K10543 D-xylose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2071_13
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10298..11884
DNA (1587bp) protein (529aa)
ABC sugar transporter, fused ATPase subunits; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9L0_9BURK rbh
ABC transporter related {ECO:0000313|EMBL:EDT07196.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
SCNpilot_expt_1000_bf_scaffold_2071_14
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11881..13083
DNA (1203bp) protein (401aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EDT07174.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EDT07174.1};; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
monosaccharide-transporting ATPase (EC:3.6.3.17); K10544 D-xylose transport system permease protein
Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9I3_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2071_15
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14557..15165
DNA (609bp) protein (203aa)
Amidase {ECO:0000313|EMBL:KJC43566.1}; EC=3.5.1.4 {ECO:0000313|EMBL:KJC43566.1};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
Amidase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G9K7_9BURK
SCNpilot_expt_1000_bf_scaffold_2071_16
unknown

Not on your lists

15295..15672
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2071_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15632..17005)
DNA (1374bp) protein (458aa)
Putative aminotransferase y4uB {ECO:0000313|EMBL:EYR83095.1}; EC=2.6.1.- {ECO:0000313|EMBL:EYR83095.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Adenosylmethionine--8-amino-7-oxononanoate transaminase; K15785 L-2,4-diaminobutyrate transaminase [EC:2.6.1.-]
Putative aminotransferase y4uB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSG0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2071_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17040..18536)
DNA (1497bp) protein (499aa)
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR83094.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR83094.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PutA, NAD-dependent aldehyde dehydrogenase; K15786 aspartate-semialdehyde dehydrogenase [EC:1.2.1.-] rbh
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX39_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2071_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18654..19142)
DNA (489bp) protein (163aa)
Leucine-responsive regulatory protein Lrp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN04_9RHIZ
Leucine-responsive regulatory protein Lrp {ECO:0000313|EMBL:EYR83093.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator; K15782 Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
SCNpilot_expt_1000_bf_scaffold_2071_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19245..20630
DNA (1386bp) protein (462aa)
Putative HTH-type transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C761_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:KDP74661.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
GntR family transcriptional regulator with aminotransferase domain rbh
SCNpilot_expt_1000_bf_scaffold_2071_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20753..21538
DNA (786bp) protein (262aa)
Putative amino-acid ABC transporter ATP-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPY6_9RHIZ
Arginine ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDP74660.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ehuA; ABC-type ectoine/hydroxyectoine transport system,ATP binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2071_22
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21614..22450
DNA (837bp) protein (279aa)
Cystine-binding periplasmic protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XHK0_SINMM rbh
ehuB; Cystine-binding periplasmic protein precursor rbh
Cystine-binding periplasmic protein {ECO:0000313|EMBL:AEH84026.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_2071_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22522..23181
DNA (660bp) protein (220aa)
Putative amino-acid ABC transporter permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX44_9RHIZ rbh
Putative amino-acid ABC transporter permease protein {ECO:0000313|EMBL:EYR78343.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino-acid ABC transporter permease protein y4tF rbh
SCNpilot_expt_1000_bf_scaffold_2071_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23184..23846
DNA (663bp) protein (221aa)
Putative amino-acid ABC transporter permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN09_9RHIZ
Amino acid ABC transporter permease {ECO:0000313|EMBL:KDP74657.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ectoine/hydroxyectoine ABC transporter permease EhuD; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2071_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23846..24628
DNA (783bp) protein (261aa)
arylmalonate decarboxylase; K01799 maleate isomerase [EC:5.2.1.1]
Ectoine utilization protein EutA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C766_9RHIZ
Ectoine utilization protein EutA {ECO:0000313|EMBL:EYR78341.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2071_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24625..25608
DNA (984bp) protein (328aa)
Threonine dehydratase {ECO:0000313|EMBL:KDP74655.1}; EC=4.3.1.19 {ECO:0000313|EMBL:KDP74655.1};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Putative threonine dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPZ1_9RHIZ rbh
eutB-3; ectoine utilization protein EutB 3 rbh
SCNpilot_expt_1000_bf_scaffold_2071_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25605..26597
DNA (993bp) protein (331aa)
Ornithine cyclodeaminase 1 {ECO:0000313|EMBL:EYR78339.1}; EC=4.3.1.12 {ECO:0000313|EMBL:EYR78339.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ectoine utilization protein EutC (EC:4.3.1.12) rbh
Ornithine cyclodeaminase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSH0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2071_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26632..27813
DNA (1182bp) protein (394aa)
Ectoine utilization protein EutD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX49_9RHIZ rbh
X-Pro dipeptidase {ECO:0000313|EMBL:KDP74653.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
dipeptidase; K15783 ectoine hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_2071_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27817..28779
DNA (963bp) protein (321aa)
Putative succinylglutamate desuccinylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN16_9RHIZ rbh
Putative succinylglutamate desuccinylase {ECO:0000313|EMBL:EYR78337.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
eutE; ectoine utilization protein EutE rbh
SCNpilot_expt_1000_bf_scaffold_2071_30
unknown

Not on your lists

comp(29020..29385)
DNA (366bp) protein (122aa)

This feature has no annotations

Displaying items 1-30 of 39 in total

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