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SCNpilot_expt_1000_bf_scaffold_2175

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2175_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..380
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Aeromonas RepID=Q68E52_AERCA
Thiol-disulfide isomerase {ECO:0000313|EMBL:BAQ39166.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2175_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

384..869
DNA (486bp) protein (162aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=N7A1X5_9RHOO
Phenylalanyl-tRNA synthetase beta subunit {ECO:0000313|EMBL:BAQ39167.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2175_3
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1062..2129
DNA (1068bp) protein (356aa)
MFS family transmembrane transport protein n=5 Tax=Proteobacteria RepID=N6Z347_9RHOO rbh
MFS family transmembrane transport protein {ECO:0000313|EMBL:EQC03217.1}; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
major facilitator superfamily transporter rbh
SCNpilot_expt_1000_bf_scaffold_2175_4
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2160..2561)
DNA (402bp) protein (134aa)
Endoribonuclease L-PSP n=6 Tax=Bacteria RepID=L7VQ90_9BACT
Endoribonuclease L-psp family protein {ECO:0000313|EMBL:EQC03218.1}; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
uncharacterized LOC100199930
SCNpilot_expt_1000_bf_scaffold_2175_5
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2668..3117)
DNA (450bp) protein (150aa)
Uncharacterized protein n=6 Tax=Bacteria RepID=L7VVK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EQC03219.1}; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2175_6
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3205..3777)
DNA (573bp) protein (191aa)
Uncharacterized protein n=6 Tax=Bacteria RepID=L7VUC6_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO98313.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2175_7
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3869..4837)
DNA (969bp) protein (323aa)
Putative metal-ion transporter n=2 Tax=Aeromonas RepID=Q68E46_AERCA rbh
Magnesium transporter {ECO:0000313|EMBL:KGY62536.1}; Putative metal-ion transporter {ECO:0000313|EMBL:CAG15110.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
magnesium transporter rbh
SCNpilot_expt_1000_bf_scaffold_2175_8
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4834..5538)
DNA (705bp) protein (235aa)
Glutathione S-transferase family protein n=4 Tax=Proteobacteria RepID=N6Z352_9RHOO rbh
Glutathione S-transferase {ECO:0000313|EMBL:KJM84816.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
glutathione S-transferase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_2175_9
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5671..6210)
DNA (540bp) protein (180aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
msrA2; methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
Peptide methionine sulfoxide reductase MsrA n=5 Tax=Proteobacteria RepID=H3LIA6_KLEOX rbh
SCNpilot_expt_1000_bf_scaffold_2175_10
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6212..6655)
DNA (444bp) protein (148aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
Peptide methionine sulfoxide reductase MsrB n=4 Tax=Proteobacteria RepID=Q68E43_AERCA rbh
methionine sulfoxide reductase B
SCNpilot_expt_1000_bf_scaffold_2175_11
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6802..7761)
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=4 Tax=Proteobacteria RepID=H3LIA4_KLEOX rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KJM84819.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2175_12
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7906..9138
DNA (1233bp) protein (411aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=T0PKH3_AERSA rbh
Osmotically inducible protein C {ECO:0000313|EMBL:KJM84820.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
OsmC family protein; K06889; K07397 putative redox protein
SCNpilot_expt_1000_bf_scaffold_2175_13
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9135..9734
DNA (600bp) protein (200aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=3 Tax=Gammaproteobacteria RepID=T0PGT3_AERSA rbh
SCNpilot_expt_1000_bf_scaffold_2175_14
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9737..10759
DNA (1023bp) protein (341aa)
oxidoreductase (EC:1.-.-.-); K00540 [EC:1.-.-.-] rbh
Uncharacterized protein n=5 Tax=Proteobacteria RepID=V3PMW8_9ENTR rbh
Oxidoreductase {ECO:0000313|EMBL:KJL63957.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
SCNpilot_expt_1000_bf_scaffold_2175_15
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11156..11650)
DNA (495bp) protein (165aa)
MarR family transcriptional regulator n=4 Tax=Gammaproteobacteria RepID=T0QNV0_AERSA
MarR family transcriptional regulator {ECO:0000313|EMBL:EQC03229.1}; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2175_16
unknown

Not on your lists

11740..12396
DNA (657bp) protein (219aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2175_17
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12393..12881
DNA (489bp) protein (163aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003670B29 rbh
Integral membrane protein {ECO:0000313|EMBL:ENO98324.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2175_18
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12939..13337
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F71AB
Uncharacterized protein {ECO:0000313|EMBL:KJM84823.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
SCNpilot_expt_1000_bf_scaffold_2175_19
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13376..14335)
DNA (960bp) protein (320aa)
Integral membrane protein n=4 Tax=Proteobacteria RepID=N6Z306_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:KJO78129.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
hypothetical protein; K07112
SCNpilot_expt_1000_bf_scaffold_2175_20
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14362..14961)
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Klebsiella oxytoca 10-5242 RepID=H3LI96_KLEOX rbh
MarR family transcriptional regulator {ECO:0000313|EMBL:ENO98276.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2175_21
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15152..16048
DNA (897bp) protein (299aa)
LysR-type transcriptional regulator n=1 Tax=Aeromonas caviae RepID=Q68E32_AERCA rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KJM84825.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2175_22
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16045..16281)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Proteobacteria RepID=UPI0003647D82
Uncharacterized protein {ECO:0000313|EMBL:KJM84826.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2175_23
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16284..17504)
DNA (1221bp) protein (407aa)
Conjugal transfer protein TrbI n=1 Tax=Aeromonas caviae RepID=Q68E31_AERCA rbh
Conjugal transfer protein TraI {ECO:0000313|EMBL:KJP31019.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
trbI; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_2175_24
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17501..18550)
DNA (1050bp) protein (350aa)
Conjugal transfer protein TrbG n=1 Tax=Aeromonas caviae RepID=Q68E30_AERCA rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KJM84828.1}; TaxID=1619247 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
trbG; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_expt_1000_bf_scaffold_2175_25
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18547..18807)
DNA (261bp) protein (87aa)
conjugal transfer protein TrbF n=3 Tax=Proteobacteria RepID=UPI00037A7ECA
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KHJ55159.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Displaying 25 items

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