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SCNpilot_expt_1000_bf_scaffold_2192

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2192_1
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..228
DNA (228bp) protein (76aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
Adenosylhomocysteinase n=2 Tax=Agrobacterium RepID=F0L2Z0_AGRSH
SCNpilot_expt_1000_bf_scaffold_2192_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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478..3027
DNA (2550bp) protein (850aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Histidine kinase n=1 Tax=Rhizobium sp. AP16 RepID=J2CUI8_9RHIZ
two-component sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_2192_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3024..4535
DNA (1512bp) protein (504aa)
chlorosome protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000371F07B
hypothetical protein; K06925 UPF0079 ATP-binding protein; K07102
ATPase, YjeE family {ECO:0000313|EMBL:EJC68749.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_2192_4
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4545..5276
DNA (732bp) protein (244aa)
Nucleotidyl transferase n=1 Tax=Rhizobium sp. RepID=L0NKG7_RHISP rbh
Nucleotidyl transferase {ECO:0000313|EMBL:CCF21578.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
putative nucleotidyl transferase protein rbh
SCNpilot_expt_1000_bf_scaffold_2192_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5276..8470
DNA (3195bp) protein (1065aa)
Double-strand break repair protein AddB n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JG49_AGRRK rbh
Double-strand break repair protein AddB {ECO:0000313|EMBL:ACM24832.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
addB; double-strand break repair protein AddB rbh
SCNpilot_expt_1000_bf_scaffold_2192_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8463..11183
DNA (2721bp) protein (907aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Double-strand break repair helicase AddA, alphaproteobacterial type n=1 Tax=Rhizobium sp. AP16 RepID=J2WD97_9RHIZ
addA; double-strand break repair helicase AddA
SCNpilot_expt_1000_bf_scaffold_2192_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11700..11999
DNA (300bp) protein (100aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J3BBB8_9RHIZ
uvrD; ATP-dependent DNA helicase
SCNpilot_expt_1000_bf_scaffold_2192_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12079..12399
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U3F6_RHIRD
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
trxA; thioredoxin; K03671 thioredoxin 1
SCNpilot_expt_1000_bf_scaffold_2192_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12461..13816)
DNA (1356bp) protein (452aa)
folC; folC; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
FolC n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AB44_RHIET
FolC {ECO:0000313|EMBL:EGE58213.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_2192_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13908..14837)
DNA (930bp) protein (310aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Rhizobium sp. CF142 RepID=J1T007_9RHIZ
accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit
SCNpilot_expt_1000_bf_scaffold_2192_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14892..15731)
DNA (840bp) protein (280aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
trpA; tryptophan synthase alpha chain (EC:4.2.1.20)
tryptophan synthase subunit alpha n=1 Tax=Rhizobium mongolense RepID=UPI0003B72EEF
SCNpilot_expt_1000_bf_scaffold_2192_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15736..16956)
DNA (1221bp) protein (407aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain [EC:4.2.1.20]
tryptophan synthase subunit beta n=1 Tax=Rhizobium giardinii RepID=UPI00036C29BB rbh
SCNpilot_expt_1000_bf_scaffold_2192_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16953..17627)
DNA (675bp) protein (225aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
trpF; N-(5'-phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] rbh
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAA4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2192_14
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17695..18456)
DNA (762bp) protein (254aa)
Zinc metallopeptidase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JG41_AGRRK
zinc metallopeptidase; K07043
Uncharacterized protein {ECO:0000313|EMBL:KEA04637.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_2192_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18558..19001)
DNA (444bp) protein (148aa)
membrane protein n=1 Tax=Rhizobium RepID=UPI0003621AC8
Membrane protein {ECO:0000313|EMBL:AHF86236.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_2192_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19164..20444)
DNA (1281bp) protein (427aa)
Polyhydroxyalkanoate depolymerase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFJ2_RHITR
polyhydroxyalkanoate depolymerase
Polyhydroxyalkanoate depolymerase {ECO:0000313|EMBL:AGB69451.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2192_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20693..22102)
DNA (1410bp) protein (470aa)
pyridoxal-dependent decarboxylase; K01593 aromatic-L-amino-acid decarboxylase [EC:4.1.1.28] rbh
UPI0003CFDDE1 related cluster n=1 Tax=unknown RepID=UPI0003CFDDE1
Amino acid decarboxylase {ECO:0000313|EMBL:KDP76554.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_2192_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22193..22714)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LDJ2_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69448.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 18 items

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