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SCNpilot_expt_1000_bf_scaffold_2194

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2194_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..430)
DNA (429bp) protein (143aa)
Putative acetyltransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WS96_9RHIZ
Putative acetyltransferase {ECO:0000313|EMBL:EJK85888.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2194_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

685..1671
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U5Q0_9RHIZ
Putative glutathione S-transferase {ECO:0000313|EMBL:EYR82246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2194_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1678..2166)
DNA (489bp) protein (163aa)
DNA mismatch repair protein MutT n=1 Tax=Rhizobium mongolense RepID=UPI0003B53E85
NUDIX hydrolase domain-containing protein {ECO:0000313|EMBL:AJD42010.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hydrolase, MutT/nudix family
SCNpilot_expt_1000_bf_scaffold_2194_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2330..3238
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AEH7_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS96247.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2194_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3416..3913
DNA (498bp) protein (166aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XBI7_RHIFR
rpoE; ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AFL53243.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_2194_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4813..6555)
DNA (1743bp) protein (581aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000361C7E5
SCNpilot_expt_1000_bf_scaffold_2194_7
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6850..8034)
DNA (1185bp) protein (395aa)
benzoate transporter n=1 Tax=Rhizobium radiobacter RepID=UPI0003647C1B
Benzoate transporter {ECO:0000313|EMBL:KGE83739.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Benzoate transporter
SCNpilot_expt_1000_bf_scaffold_2194_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8133..8777)
DNA (645bp) protein (215aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q4J3_RHIE6
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE94124.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_2194_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8774..9316)
DNA (543bp) protein (181aa)
ECF family RNA polymerase sigma factor n=2 Tax=Agrobacterium RepID=F0L8W2_AGRSH
ECF family RNA polymerase sigma factor {ECO:0000313|EMBL:CDN92397.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
sigD; ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2194_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9500..9712
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI000362A961
Uncharacterized protein {ECO:0000313|EMBL:KDR90250.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2194_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9780..10133)
DNA (354bp) protein (118aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpP; ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7D8_AGRRK
SCNpilot_expt_1000_bf_scaffold_2194_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10130..10315)
DNA (186bp) protein (62aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D235_9RHIZ
ATP-dependent Clp protease proteolytic subunit 2
SCNpilot_expt_1000_bf_scaffold_2194_13
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10527..11294
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PVU9_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE83732.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2194_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11344..11808)
DNA (465bp) protein (155aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium gro
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPC2_RHITR
queF; 7-cyano-7-deazaguanine reductase
SCNpilot_expt_1000_bf_scaffold_2194_15
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11805..12725)
DNA (921bp) protein (307aa)
Cation efflux protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IG11_9RHIZ rbh
Cation efflux protein {ECO:0000313|EMBL:EPE97928.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
cation efflux protein rbh
SCNpilot_expt_1000_bf_scaffold_2194_16
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13001..13711
DNA (711bp) protein (237aa)
Putative oxidoreductase NAD protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCT3_9RHIZ rbh
bluB; cob(II)yrinic acid a,c-diamide reductase rbh
Putative oxidoreductase {ECO:0000313|EMBL:GAJ90636.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_2194_17
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13852..16041)
DNA (2190bp) protein (730aa)
Anthranilate synthase {ECO:0000313|EMBL:EJZ19747.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EJZ19747.1};; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
trpE; anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27]
Anthranilate synthase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VLA8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2194_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17191..18519)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036BE867
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor {ECO:0000313|EMBL:EGP56317.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_2194_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18794..19588
DNA (795bp) protein (265aa)
extensin n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F58E8
Uncharacterized protein {ECO:0000313|EMBL:EJC67527.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
extensin family protein
SCNpilot_expt_1000_bf_scaffold_2194_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19752..21431)
DNA (1680bp) protein (560aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fhs; formate-tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVK0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2194_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21707..22498
DNA (792bp) protein (264aa)
DNA-binding protein with HTH domain n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0V2R9_RHILV
DNA-binding protein with HTH domain {ECO:0000313|EMBL:EJC67531.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
LuxR/GerE family transcriptional regulatory protein
SCNpilot_expt_1000_bf_scaffold_2194_22
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22536..22988
DNA (453bp) protein (151aa)
PAS domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SB46_9RHIZ
PAS domain-containing protein {ECO:0000313|EMBL:CDN54918.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2194_23
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22995..24113)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C1R9_9RHIZ rbh
Uncharacterized conserved protein UCP029693 {ECO:0000313|EMBL:CDN54919.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2194_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24106..25407)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003738DA3
Uncharacterized protein {ECO:0000313|EMBL:AHK45092.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2194_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25401..27311)
DNA (1911bp) protein (637aa)
ATPase AAA n=1 Tax=Rhizobium meliloti RepID=UPI00036D8ECF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDH86446.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_2194_26
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27316..28230)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MFR2_RHISN
Uncharacterized protein {ECO:0000313|EMBL:KEC77363.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2194_27
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28493..28894)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UBV6_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAC46976.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
Displaying 27 items

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