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SCNpilot_expt_1000_bf_scaffold_2837

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2837_1
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123..554)
DNA (432bp) protein (144aa)
Transcriptional regulator AsnC family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZ82_AGRVS
transcriptional regulator AsnC family
Transcriptional regulator AsnC family {ECO:0000313|EMBL:ACM37327.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2837_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

679..1806
DNA (1128bp) protein (376aa)
Saccharopine dehydrogenase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9T4_9RHIZ rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:KEA04421.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_2837_3
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2025..2279
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003821ADB
Uncharacterized protein {ECO:0000313|EMBL:KEC80808.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2302..2601
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6W7_9RHIZ
Transporter {ECO:0000313|EMBL:KGD95025.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2631..2873
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2B4H8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ30925.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2914..3627)
DNA (714bp) protein (238aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLT6_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EKF18177.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2837_7
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3624..4322)
DNA (699bp) protein (233aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLT6_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EKF18177.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2837_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4967..6322
DNA (1356bp) protein (452aa)
Sensory methylation accepting chemotaxis protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYA0_AGRVS
sensory methylation accepting chemotaxis protein
Sensory methylation accepting chemotaxis protein {ECO:0000313|EMBL:ACM37130.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2837_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6425..6820)
DNA (396bp) protein (132aa)
GreA/GreB family elongation factor n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11G81_MESSB
Transcription elongation factor {ECO:0000313|EMBL:EXL09325.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
nucleoside diphosphate kinase regulator; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_1000_bf_scaffold_2837_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7167..8342)
DNA (1176bp) protein (392aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BD216 rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EKF18180.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
extracellular ligand-binding receptor
SCNpilot_expt_1000_bf_scaffold_2837_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8584..9453)
DNA (870bp) protein (290aa)
LysR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A4958
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF18172.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2837_12
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9600..10754
DNA (1155bp) protein (385aa)
monooxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000368934F rbh
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:EKF18173.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
monooxygenase FAD-binding
SCNpilot_expt_1000_bf_scaffold_2837_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10784..11572
DNA (789bp) protein (263aa)
dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003817750 rbh
putative dioxygenase rbh
Putative dioxygenase {ECO:0000313|EMBL:ABS17092.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_2837_14
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11957..12457
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364FF2F
Alpha/beta hydrolase domain-containing protein {ECO:0000313|EMBL:EKF18175.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
alpha/beta hydrolase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2837_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12642..13553)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000378D273 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF18176.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2837_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13810..14763
DNA (954bp) protein (318aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI000361C762
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:EKF18178.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2837_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14812..15357
DNA (546bp) protein (182aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6); K00452 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003828848 rbh
SCNpilot_expt_1000_bf_scaffold_2837_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15474..16637
DNA (1164bp) protein (388aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036076F2 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF18171.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter ATP-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2837_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16716..17630
DNA (915bp) protein (305aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00037154AB rbh
Inner-membrane translocator {ECO:0000313|EMBL:EKF18170.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2837_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17678..18670
DNA (993bp) protein (331aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI0003708537 rbh
Inner-membrane translocator {ECO:0000313|EMBL:EKF18169.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2837_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18667..19422
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F76C7 rbh
ABC transporter {ECO:0000313|EMBL:EKF18168.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2837_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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19416..20117
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003698834
amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein rbh
ABC-type amino acid transport system, ATPase component protein {ECO:0000313|EMBL:ADZ70296.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_2837_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20104..20931
DNA (828bp) protein (276aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E5E56 rbh
SCNpilot_expt_1000_bf_scaffold_2837_24
unknown

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21058..21234
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2837_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21372..22472
DNA (1101bp) protein (367aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nspC; carboxynorspermidine decarboxylase; K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-] rbh
Carboxynorspermidine/carboxyspermidine decarboxylase n=1 Tax=Rhizobium sp. RepID=L0NI20_RHISP rbh
SCNpilot_expt_1000_bf_scaffold_2837_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22506..23744
DNA (1239bp) protein (413aa)
Saccharopine dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS54_9RHIZ rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:EYR81633.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2837_27
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23802..25004)
DNA (1203bp) protein (401aa)
Flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family n=1 Tax=Rhizobium sp. CF080 RepID=J2SP88_9RHIZ rbh
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:KEQ04384.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein; K07007 rbh
SCNpilot_expt_1000_bf_scaffold_2837_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25110..25304)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WCY4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:AHF88447.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25370..25603)
DNA (234bp) protein (78aa)
30S ribosomal protein S21 n=2 Tax=Rhizobium etli RepID=Q2K1Q4_RHIEC
rpsU-3; 30S ribosomal protein S21 3
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_2837_30
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26001..26759)
DNA (759bp) protein (253aa)
Glutaredoxin-like protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2H9R2_9RHOB
Glutaredoxin-like protein {ECO:0000313|EMBL:AKI03506.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
glutaredoxin
Displaying items 1-30 of 34 in total

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