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SCNpilot_expt_1000_bf_scaffold_1068

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1068_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..499)
DNA (498bp) protein (166aa)
cysN; sulfate adenylyltransferase, subunit 1 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00055979};; ATP-sulfurylase large subunit {ECO:0000256|HAMAP-Rule:MF_00062}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00062}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiob
Sulfate adenylyltransferase subunit 1 n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q1W5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1068_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(501..1454)
DNA (954bp) protein (318aa)
sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase subunit 2 {ECO:0000255|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000255|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000255|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000255|HAMAP-Rule:MF_00064}; Short=SAT {ECO:0000255|HAMAP-Rule:MF_00064};; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=CYSD_RHILW
SCNpilot_expt_1000_bf_scaffold_1068_3
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1573..2313)
DNA (741bp) protein (247aa)
Phosphoadenosine phosphosulfate reductase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP04_9RHIZ
Phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:EJZ20576.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
phosphoadenosine phosphosulfate reductase
SCNpilot_expt_1000_bf_scaffold_1068_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2488..2682)
DNA (195bp) protein (65aa)
Chloride channel core n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I314_9RHIZ
Chloride channel core {ECO:0000313|EMBL:EPE99566.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
chloride channel core protein
SCNpilot_expt_1000_bf_scaffold_1068_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2689..3834)
DNA (1146bp) protein (382aa)
chloride channel protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036DB886
Chloride channel core {ECO:0000313|EMBL:EPE99566.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Chloride channel core
SCNpilot_expt_1000_bf_scaffold_1068_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3914..5566)
DNA (1653bp) protein (551aa)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054587};; Betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
betA; choline dehydrogenase; K00108 choline dehydrogenase [EC:1.1.99.1]
choline dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000361FA07 rbh
SCNpilot_expt_1000_bf_scaffold_1068_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5581..7044)
DNA (1464bp) protein (488aa)
betB; betaine aldehyde dehydrogenase; K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8] rbh
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=BETB_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_1068_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7046..8575)
DNA (1530bp) protein (510aa)
Choline sulfatase {ECO:0000313|EMBL:CCE95139.1}; EC=3.1.6.6 {ECO:0000313|EMBL:CCE95139.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Choline sulfatase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A249_RHIFH rbh
betC; choline sulfatase rbh
SCNpilot_expt_1000_bf_scaffold_1068_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8631..9215)
DNA (585bp) protein (195aa)
HTH-type transcriptional regulator BetI n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N725_RHILT
BetI family transcriptional regulator; K02167 TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_1068_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9363..9920
DNA (558bp) protein (186aa)
HdeD protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI00037D5A28
Uncharacterized protein {ECO:0000313|EMBL:AJD40420.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1068_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10204..11892
DNA (1689bp) protein (563aa)
diguanylate cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EA259
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC70070.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
GGDEF/EAL sensory box protein
SCNpilot_expt_1000_bf_scaffold_1068_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11974..12993
DNA (1020bp) protein (340aa)
Quinone oxidoreductase n=1 Tax=Rhizobium sp. RepID=L0NCE8_RHISP rbh
NAD(P)H-quinone oxidoreductase {ECO:0000313|EMBL:KGD85940.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative quinone oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1068_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13093..13752)
DNA (660bp) protein (220aa)
gst2; glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=2 Tax=Rhizobium meliloti RepID=F6E2Y1_SINMK
Glutathione-S-transferase {ECO:0000313|EMBL:AHK43711.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1068_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13868..15232)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1068_15
unknown

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comp(15706..16155)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16439..17791
DNA (1353bp) protein (451aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VLR9_RHILT
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC73763.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1068_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17988..18998
DNA (1011bp) protein (337aa)
Putative exonuclease, DNA ligase-associated n=1 Tax=Rhizobium sp. CF080 RepID=J3BSY6_9RHIZ
Putative exonuclease, DNA ligase-associated {ECO:0000313|EMBL:EUB95393.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
mRNA processing exonuclease; K07577 putative mRNA 3-end processing factor rbh
SCNpilot_expt_1000_bf_scaffold_1068_18
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19003..20613
DNA (1611bp) protein (537aa)
ATP-dependent DNA ligase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035FC57F rbh
ATP-dependent DNA ligase {ECO:0000313|EMBL:KJF65805.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
ATP-dependent DNA ligase rbh
SCNpilot_expt_1000_bf_scaffold_1068_19
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20620..22611)
DNA (1992bp) protein (664aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JTB4_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35827.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1068_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22805..23812)
DNA (1008bp) protein (336aa)
L-asparaginase II n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K8N8_RHILT
L-asparaginase II {ECO:0000313|EMBL:EJC73774.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
L-asparaginase II
SCNpilot_expt_1000_bf_scaffold_1068_21
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23992..24609)
DNA (618bp) protein (206aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP11_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJZ20586.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1068_22
unknown

Not on your lists

24725..24835
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24857..26155
DNA (1299bp) protein (433aa)
major facilitator transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036EC2D8
Multidrug efflux transporter {ECO:0000313|EMBL:EYR79176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane transporter protein
SCNpilot_expt_1000_bf_scaffold_1068_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26152..26553
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E4D9B
Uncharacterized protein {ECO:0000313|EMBL:AHF86771.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_1068_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26550..27458)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003793063
Transcriptional regulator {ECO:0000313|EMBL:EJC70082.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1068_26
unknown

Not on your lists

27564..27791
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_27
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27865..28647
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NC71_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18494.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
L,D-transpeptidase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1068_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28792..29523
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3ECD7 rbh
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KGD85918.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1068_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29577..30023)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y0J1_RHIRD
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:EPR08474.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_1068_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30093..30821
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W423_RHILT rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJC79913.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
Displaying items 1-30 of 83 in total

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