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SCNpilot_expt_1000_bf_scaffold_1143

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1143_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..101)
DNA (99bp) protein (33aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
dadA1; D-amino acid dehydrogenase small subunit (EC:1.4.99.1)
D-amino acid dehydrogenase small subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FDH3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1143_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131..1264)
DNA (1134bp) protein (378aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
dadX; Alanine racemase, catabolic (EC:5.1.1.1) rbh
Alanine racemase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3N0_RHIML rbh
SCNpilot_expt_1000_bf_scaffold_1143_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1389..1853
DNA (465bp) protein (155aa)
Putative HTH-type transcriptional regulator y4sM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX25_9RHIZ
Putative HTH-type transcriptional regulator y4sM {ECO:0000313|EMBL:EYR82556.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative HTH-type transcriptional regulator y4sM
SCNpilot_expt_1000_bf_scaffold_1143_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1905..3239)
DNA (1335bp) protein (445aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18] rbh
Aminotransferase class-III n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B6A0D8_RHILW rbh
Aminotransferase class-III {ECO:0000313|EMBL:ACI58072.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1143_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3390..3938
DNA (549bp) protein (183aa)
HTH-type transcriptional regulator PuuR n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XEL1_RHIFR rbh
puuR; HTH-type transcriptional regulator PuuR rbh
HTH-type transcriptional regulator PuuR {ECO:0000313|EMBL:AFL54317.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1143_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4064..4555
DNA (492bp) protein (164aa)
MutT/NUDIX family NTP pyrophosphohydrolase {ECO:0000313|EMBL:CCE98261.1}; EC=3.6.1.22 {ECO:0000313|EMBL:CCE98261.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
MutT/NUDIX family NTP pyrophosphohydrolase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A5E0_RHIFH
MutT/NUDIX family NTP pyrophosphohydrolase
SCNpilot_expt_1000_bf_scaffold_1143_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4867..5622
DNA (756bp) protein (252aa)
Probable septum site-determining protein MinC n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYE2_RHITR
minC; septum site-determining protein MinC
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1143_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5656..6471
DNA (816bp) protein (272aa)
Site-determining protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X2E6_RHIFR rbh
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
minD; septum site-determining protein MinD rbh
SCNpilot_expt_1000_bf_scaffold_1143_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6468..6728
DNA (261bp) protein (87aa)
Cell division topological specificity factor n=1 Tax=Rhizobium sp. CF080 RepID=J2J8I2_9RHIZ
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
cell division topological specificity factor; K03608 cell division topological specificity factor
SCNpilot_expt_1000_bf_scaffold_1143_10
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6976..8040
DNA (1065bp) protein (355aa)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ESY86703.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ESY86703.1};; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
UPI0003CE840F related cluster n=1 Tax=unknown RepID=UPI0003CE840F
fructose-bisphosphate aldolase, class II, Calvin cycle subtype
SCNpilot_expt_1000_bf_scaffold_1143_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8324..10192
DNA (1869bp) protein (623aa)
chemotaxis protein n=1 Tax=Rhizobium giardinii RepID=UPI00037CA9F2
mcpV; chemoreceptor methyl-accepting chemotaxis transmembrane protein; K03406 methyl-accepting chemotaxis protein
Probable chemoreceptor (Methyl-accepting chemotaxis) transmembrane protein {ECO:0000313|EMBL:CAC46476.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_1143_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10271..11461)
DNA (1191bp) protein (397aa)
Putative oxidoreductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LP38_RHITR
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:AGB72481.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1143_13
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11489..12541)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NI28_RHISP rbh
Uncharacterized protein {ECO:0000313|EMBL:CCF20539.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1143_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12684..13631)
DNA (948bp) protein (316aa)
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AFP9_RHIET rbh
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EGE56711.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
sugar ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1143_15
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13707..14141)
DNA (435bp) protein (145aa)
Ribose transport system permease protein {ECO:0000313|EMBL:CDM59305.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDM59305.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter n=1 Tax=Rhizobium sp. CF142 RepID=J1TBL9_9RHIZ
sugar ABC transporter, permease; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1143_16
unknown

Not on your lists

14303..14896
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Brucella melitensis NI RepID=G4PHB4_BRUML
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1143_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14769..16241)
DNA (1473bp) protein (491aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AWQ3_RHILS
ABC transporter related {ECO:0000313|EMBL:ACS57950.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1143_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16398..17444
DNA (1047bp) protein (349aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VGT8_9RHIZ rbh
LacI family transcriptional repressor CytR {ECO:0000313|EMBL:AIC29035.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
cytR; LacI family transcriptional repressor CytR rbh
SCNpilot_expt_1000_bf_scaffold_1143_19
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17476..18786)
DNA (1311bp) protein (437aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
Xylose isomerase (EC:5.3.1.5); K01805 xylose isomerase [EC:5.3.1.5] rbh
Xylose isomerase n=1 Tax=Rhizobium sp. RepID=L0NHI6_RHISP rbh
SCNpilot_expt_1000_bf_scaffold_1143_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19070..20524)
DNA (1455bp) protein (485aa)
xylB; xylulose kinase (EC:2.7.1.17); K00854 xylulokinase [EC:2.7.1.17]
D-xylulose kinase n=1 Tax=Rhizobium sp. CF142 RepID=J2L6N4_9RHIZ rbh
D-xylulose kinase {ECO:0000313|EMBL:EJJ29167.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1143_21
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20553..21575)
DNA (1023bp) protein (341aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J1SV93_9RHIZ rbh
LacI family transcriptional regulator protein {ECO:0000313|EMBL:AJD42871.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1143_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21752..22504
DNA (753bp) protein (251aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VJB4_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB08300.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1143_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22621..23361
DNA (741bp) protein (247aa)
sugar ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
Sugar ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VC6_BRADU rbh
Sugar (Ribose) ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFC64558.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_1143_24
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23361..24386
DNA (1026bp) protein (342aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBS4_9BRAD rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB10791.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
sugar ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1143_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24476..25420
DNA (945bp) protein (315aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUF7_9RHIZ rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB10790.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ribose ABC transporter substrate-binding protein; K02058 simple sugar transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1143_26
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25477..26229)
DNA (753bp) protein (251aa)
Putative short-chain dehydrogenase/reductase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6Z7_AZOL4 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KJH67982.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
putative short-chain dehydrogenase/reductase rbh
SCNpilot_expt_1000_bf_scaffold_1143_27
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26481..27872
DNA (1392bp) protein (464aa)
Multi anti extrusion protein MatE n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3I4T9_9RHIZ rbh
Multi anti extrusion protein MatE {ECO:0000313|EMBL:EMG54962.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
multi antimicrobial extrusion protein MatE rbh
SCNpilot_expt_1000_bf_scaffold_1143_28
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27869..28294
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B6C5AF
Uncharacterized protein {ECO:0000313|EMBL:EJJ27147.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1143_29
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28331..28540)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035DDDDA
Putative conserved protein {ECO:0000313|EMBL:CDM55765.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1143_30
unknown

Not on your lists

28710..29234
DNA (525bp) protein (175aa)

This feature has no annotations

Displaying items 1-30 of 59 in total

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