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SCNpilot_expt_1000_bf_scaffold_1333

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1333_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13..345)
DNA (333bp) protein (111aa)
GCN5-like N-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW48_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EYR77403.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_1333_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1465..1965)
DNA (501bp) protein (167aa)
Aminotransferase class-III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENV2_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:EYR77405.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
class III aminotransferase
SCNpilot_expt_1000_bf_scaffold_1333_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1962..2834)
DNA (873bp) protein (291aa)
Aminotransferase class-III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENV2_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:EYR77405.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
class III aminotransferase
SCNpilot_expt_1000_bf_scaffold_1333_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2880..3644)
DNA (765bp) protein (255aa)
Glutamine transport ATP-binding protein GlnQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C690_9RHIZ rbh
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:EYR77406.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1333_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3641..4300)
DNA (660bp) protein (220aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM12_9RHIZ rbh
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:EYR77407.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1333_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4303..4527)
DNA (225bp) protein (75aa)
Putative amino acid ABC transporter permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW44_9RHIZ
Putative amino acid ABC transporter permease protein {ECO:0000313|EMBL:EYR77408.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1333_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5024..5809)
DNA (786bp) protein (262aa)
Cystine-binding periplasmic protein FliY n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRH1_9RHIZ rbh
Cystine-binding periplasmic protein FliY {ECO:0000313|EMBL:EYR77409.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
family 3 extracellular solute-binding protein; K02424 cystine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1333_8
Acetobacter cibinongensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6004..6933)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003758BB9 rbh
Transcriptional regulator LysR {ECO:0000313|EMBL:GAN59796.1}; TaxID=1231339 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter cibinongensis 4H-1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1333_9
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7000..8010
DNA (1011bp) protein (337aa)
Nitrilase n=2 Tax=Gluconobacter oxydans RepID=K7SIB4_GLUOY rbh
nitrilase rbh
Nitrilase {ECO:0000313|EMBL:AFW03099.1}; TaxID=1224746 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans H24.;"
SCNpilot_expt_1000_bf_scaffold_1333_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8256..9860
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CCD4C rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC67090.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_1333_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9868..10194)
DNA (327bp) protein (109aa)
ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F23036
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component {ECO:0000313|EMBL:EYR78618.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1333_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10622..11455)
DNA (834bp) protein (278aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000319163D rbh
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component {ECO:0000313|EMBL:EYR78617.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppd3; putative ATP-binding protein, ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_1333_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11452..13455)
DNA (2004bp) protein (668aa)
Dipeptide transport system permease protein DppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCV8_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR78615.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1333_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13474..15123)
DNA (1650bp) protein (550aa)
ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D384B8 rbh
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:EYR78614.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1333_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15303..16469)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037D749A rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF87251.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein; K09003 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1333_16
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16693..17391
DNA (699bp) protein (233aa)
putative aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13] rbh
Putative aspartate racemase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZED6_AZOL4 rbh
Putative aspartate racemase {ECO:0000313|EMBL:CBS90055.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_1333_17
unknown

Not on your lists

comp(17532..17783)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1333_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18003..18434
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KNN9_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP21697.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1333_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18496..18708)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00027D8AC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS60368.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1333_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18728..18952)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000378D8D4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS60369.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1333_21
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19167..19412
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037B76FB
transcriptional regulator, XRE family
Putative transcriptional regulator protein {ECO:0000313|EMBL:CDN46446.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_1333_22
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19585..19821
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=A9CL70_AGRT5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK90815.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_expt_1000_bf_scaffold_1333_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20046..20414)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TL59_STEMA
ATP-binding protein {ECO:0000313|EMBL:AHY59027.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1333_24
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20453..20812
DNA (360bp) protein (120aa)
PKHD-type hydroxylase VY88_15265 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase AZOLI_p20483 n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDL7_AZOL4
SCNpilot_expt_1000_bf_scaffold_1333_25
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20814..21587
DNA (774bp) protein (258aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
2-hydroxy-acid oxidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCQ6_9RHIZ
2-hydroxy-acid oxidase {ECO:0000313|EMBL:AHB47805.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_1333_26
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21622..21900)
DNA (279bp) protein (93aa)
Histone family protein DNA-binding protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CZC1_RHILU
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EKJ95091.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
DNA-binding protein HU-beta
SCNpilot_expt_1000_bf_scaffold_1333_27
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22321..22836
DNA (516bp) protein (172aa)
NTP pyrophosphohydrolase n=1 Tax=Rhizobium sp. CF080 RepID=J2HSV2_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EUB96314.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
NTP pyrophosphohydrolase, MutT family
SCNpilot_expt_1000_bf_scaffold_1333_28
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22979..23218)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGZ4_RICCO
Uncharacterized protein {ECO:0000313|EMBL:CDM61148.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1333_29
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23378..23800)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037692B2
putative small integral membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CCE99814.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1333_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23869..24750)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHD6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78018.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying items 1-30 of 58 in total

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