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SCNpilot_expt_1000_bf_scaffold_1445

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1445_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..858)
DNA (858bp) protein (286aa)
Thioesterase of type I polyketide synthase or non-ribosomal peptide synthase like protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DC59_9RHIZ rbh
Thioesterase of type I polyketide synthase or non-ribosomal peptide synthase like protein {ECO:0000313|EMBL:EJK87504.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
non-ribosomal peptide synthetase rbh
SCNpilot_expt_1000_bf_scaffold_1445_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(881..1879)
DNA (999bp) protein (333aa)
nadE; NAD synthetase; K01916 NAD+ synthase [EC:6.3.1.5] rbh
NH(3)-dependent NAD(+) synthetase {ECO:0000255|HAMAP-Rule:MF_00193}; EC=6.3.1.5 {ECO:0000255|HAMAP-Rule:MF_00193};; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=NADE_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_1445_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1876..3429)
DNA (1554bp) protein (518aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Rhizobium sp. AP16 RepID=J2LIT6_9RHIZ rbh
AMP-dependent synthetase {ECO:0000313|EMBL:KEA03403.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
matB; long-chain-fatty-acid-CoA ligase rbh
SCNpilot_expt_1000_bf_scaffold_1445_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3444..3719)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNF9_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM29090.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1445_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3731..5686)
DNA (1956bp) protein (652aa)
asnB; asparagine synthase (glutamine-hydrolyzing); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] rbh
Asparagine synthetase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNF8_AGRRK rbh
Asparagine synthase {ECO:0000313|EMBL:GAJ92327.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1445_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5970..6728
DNA (759bp) protein (253aa)
hemK; protoporphyrinogen oxidase (methyltransferase) protein; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] rbh
Protoporphyrinogen oxidase (Methyltransferase) protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNF7_AGRRK rbh
Protein methyltransferase HemK {ECO:0000313|EMBL:GAJ92326.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1445_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6917..7699)
DNA (783bp) protein (261aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNF6_AGRRK
transcriptional regulator protein
Transcriptional regulator protein {ECO:0000313|EMBL:ACM29087.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1445_8
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8056..8748
DNA (693bp) protein (231aa)
Glycosyl transferase possibly involved in lipopolysaccharide synthesis n=1 Tax=Rhizobium sp. AP16 RepID=J2DWB0_9RHIZ
exoY; exopolysaccharide production protein
Glycosyl transferase possibly involved in lipopolysaccharide synthesis {ECO:0000313|EMBL:EJK87512.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1445_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8753..9619
DNA (867bp) protein (289aa)
Glycosyl transferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNF4_AGRRK rbh
glycosyl transferase rbh
Glycosyl hydrolase {ECO:0000313|EMBL:KEA03408.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1445_10
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9641..11098
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DC86_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJK87514.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1445_11
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11095..12489
DNA (1395bp) protein (465aa)
Lipid A core-O-antigen ligase-like enyme n=1 Tax=Rhizobium sp. AP16 RepID=J2WYX9_9RHIZ rbh
Lipid A core-O-antigen ligase-like enyme {ECO:0000313|EMBL:EJK87515.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
exoQ; exopolysaccharide production protein rbh
SCNpilot_expt_1000_bf_scaffold_1445_12
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12486..13577
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003776C22 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96330.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_1445_13
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13574..15367
DNA (1794bp) protein (598aa)
Beta-glucanase/beta-glucan synthetase n=1 Tax=Rhizobium sp. AP16 RepID=J2LIX0_9RHIZ rbh
Beta-glucanase/beta-glucan synthetase {ECO:0000313|EMBL:EJK87516.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
exsH; endo-1,3-1,4-beta-glycanase
Displaying 13 items

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