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SCNpilot_expt_1000_bf_scaffold_1496

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1496_1
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..414)
DNA (414bp) protein (138aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H378_RHIRD
Acriflavine resistance protein B {ECO:0000313|EMBL:KJF72130.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_1496_2
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1133..2212)
DNA (1080bp) protein (360aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QG51_9RHIZ rbh
RND family efflux transporter, MFP subunit rbh
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:CDI11357.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_1496_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2710..3135
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U652_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KDP71763.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1496_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3293..3946
DNA (654bp) protein (218aa)
Protease Do {ECO:0000313|EMBL:EUB95636.1}; EC=3.4.21.108 {ECO:0000313|EMBL:EUB95636.1};; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Trypsin-like serine protease with C-terminal PDZ domain-containing protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2J4Y2_9RHIZ
HtrA protease/chaperone protein
SCNpilot_expt_1000_bf_scaffold_1496_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4377..4751
DNA (375bp) protein (125aa)
Trypsin-like serine protease with C-terminal PDZ domain-containing protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J3B428_9RHIZ
Peptidase Do {ECO:0000313|EMBL:CDN54084.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
HtrA protease/chaperone protein
SCNpilot_expt_1000_bf_scaffold_1496_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4812..6527)
DNA (1716bp) protein (572aa)
Acetyl-/propionyl-coenzyme A carboxylase alpha chain {ECO:0000313|EMBL:EYR78288.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EYR78288.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
accCch; acetyl-CoA carboxylase; K11263 acetyl-/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.3.4.14] rbh
Acetyl-/propionyl-coenzyme A carboxylase alpha chain n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW81_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1496_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6524..8128)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETK4_9RHIZ rbh
Biotin-dependent carboxylase {ECO:0000313|EMBL:EYR78289.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1496_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8125..8889)
DNA (765bp) protein (255aa)
UPF0271 protein H009_01829 n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AG92_RHIRD
UPF0271 protein H009_01829 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
LamB/YcsF family protein; K07160 UPF0271 protein
SCNpilot_expt_1000_bf_scaffold_1496_9
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8998..11913)
DNA (2916bp) protein (972aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DDP7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EDQ32110.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1496_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12467..13999
DNA (1533bp) protein (511aa)
Family 5 extracellular solute-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I2R6_9RHIZ
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:EPE94048.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ABC transporter, substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1496_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14208..15215
DNA (1008bp) protein (336aa)
ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQ42_RHITR rbh
ABC transporter, permease protein rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AGB72224.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1496_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15611..16090
DNA (480bp) protein (160aa)
Dipeptide transport system permease protein DppC n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V896_9RHIZ
ABC transporter, permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:AGB72225.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1496_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16087..16920
DNA (834bp) protein (278aa)
ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LND6_RHITR
ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB72226.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1496_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16931..17743
DNA (813bp) protein (271aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3N5_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENN87234.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1496_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17842..18435
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FMJ4_9RHIZ
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CDX36954.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_1496_16
Fusarium verticillioides, Fusarium, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

18802..19464
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=E2N509_CAPSP
Uncharacterized protein {ECO:0000313|EMBL:EWG54527.1}; TaxID=334819 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium fujikuroi species complex.;" source="Gibberella moniliformis (strain M3125 / FGSC 7600) (Maize ear and; stalk rot fungus) (Fusarium verticillioides).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1496_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19485..21071)
DNA (1587bp) protein (529aa)
Phytoene dehydrogenase-like oxidoreductase n=1 Tax=Rhizobium sp. CF080 RepID=J3C9T0_9RHIZ rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KGD87343.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
FAD dependent oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_1496_18
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21213..24425
DNA (3213bp) protein (1071aa)
Phytoene dehydrogenase-like oxidoreductase n=1 Tax=Rhizobium sp. CF080 RepID=J3CL71_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EUC01169.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1496_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24284..25117)
DNA (834bp) protein (278aa)
Extracellular solute-binding protein family 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX69_9RHIZ rbh
ABC-type amino acid transport/signal transduction systemperiplasmic component {ECO:0000313|EMBL:EYR82198.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
family 3 extracellular solute-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1496_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25245..25547)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0002DC6141
Putative GYD family protein {ECO:0000313|EMBL:EYR82199.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1496_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25556..25972)
DNA (417bp) protein (139aa)
Isochorismatase hydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY12_9RHIZ
Isochorismatase hydrolase {ECO:0000313|EMBL:EYR82200.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_1496_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26302..27216
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0003055A3E rbh
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR82201.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1496_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27213..28106
DNA (894bp) protein (298aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D642_9RHIZ rbh
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR82202.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1496_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28064..28573)
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7Q4_AGRRK
VirR {ECO:0000313|EMBL:KDP72941.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1496_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28642..28863)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EXF3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX43057.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1496_26
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29200..29595
DNA (396bp) protein (132aa)
ArsC family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F4DF
ArsC family transcriptional regulator {ECO:0000313|EMBL:KGJ04987.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
protein tyrosine phosphatase
SCNpilot_expt_1000_bf_scaffold_1496_27
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29666..29851
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036C0AC7
Uncharacterized protein {ECO:0000313|EMBL:AJC82598.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1496_28
unknown

Not on your lists

comp(29832..29984)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1496_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30060..30209
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI37_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79229.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1496_30
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30513..31433
DNA (921bp) protein (307aa)
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JX94_AGRVS
mcpA; methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ACM36872.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
Displaying items 1-30 of 46 in total

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