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SCNpilot_expt_1000_bf_scaffold_1583

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1583_1
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..313
DNA (312bp) protein (104aa)
Uncharacterized protein n=3 Tax=Alphaproteobacteria RepID=C8WDT8_ZYMMN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF42266.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1583_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(408..1649)
DNA (1242bp) protein (414aa)
HipA N-terminal domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1] rbh
HipA N-terminal domain-containing protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NSF8_9RHIZ rbh
HipA N-terminal domain-containing protein {ECO:0000313|EMBL:EKF42265.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1583_3
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1627..1947)
DNA (321bp) protein (107aa)
XRE family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NWR2_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:KFE34699.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1583_4
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2267..2533
DNA (267bp) protein (89aa)
XRE family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2N4F7_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKF42263.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1583_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2594..2869
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PME8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42262.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_6
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2998..3330
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4F7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CDX24441.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_7
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3311..3748)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI00036BB06D
Uncharacterized protein {ECO:0000313|EMBL:EPR17211.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_1000_bf_scaffold_1583_8
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..4181
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=C8WDU5_ZYMMN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFE34694.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
SCNpilot_expt_1000_bf_scaffold_1583_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4297..5346
DNA (1050bp) protein (350aa)
Replication protein A n=1 Tax=Nitratireductor indicus C115 RepID=K2N4F2_9RHIZ rbh
Replication protein A {ECO:0000313|EMBL:EKF42258.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
replication protein A rbh
SCNpilot_expt_1000_bf_scaffold_1583_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5343..5996
DNA (654bp) protein (218aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Nitratireductor indicus C115 RepID=K2PME4_9RHIZ rbh
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:EKF42257.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein rbh
SCNpilot_expt_1000_bf_scaffold_1583_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5993..6247
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P4G2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42256.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6244..6762
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NSE9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF42255.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1583_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6759..7274
DNA (516bp) protein (172aa)
TraF peptidase n=1 Tax=Nitratireductor indicus C115 RepID=K2NWQ5_9RHIZ rbh
TraF peptidase {ECO:0000313|EMBL:EKF42254.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
TraF peptidase. serine peptidase MEROPS family S26C rbh
SCNpilot_expt_1000_bf_scaffold_1583_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7310..7645
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N4E8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42253.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7650..8360
DNA (711bp) protein (237aa)
Lytic transglycosylase n=1 Tax=Nitratireductor indicus C115 RepID=K2PME0_9RHIZ rbh
Lytic transglycosylase {ECO:0000313|EMBL:EKF42252.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
lytic transglycosylase rbh
SCNpilot_expt_1000_bf_scaffold_1583_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8674..10746
DNA (2073bp) protein (691aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P4F7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF42251.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1583_17
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10922..12910
DNA (1989bp) protein (663aa)
Conjugal transfer coupling protein TraG n=1 Tax=Nitratireductor indicus C115 RepID=K2NSE3_9RHIZ rbh
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:EKF42250.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_1000_bf_scaffold_1583_18
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12925..13386
DNA (462bp) protein (154aa)
CopG family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NWQ2_9RHIZ
CopG family transcriptional regulator {ECO:0000313|EMBL:EKF42249.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
CopG family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1583_19
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13518..14525
DNA (1008bp) protein (336aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Nitratireductor indicus C115 RepID=K2N4E4_9RHIZ rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EKF42248.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_1000_bf_scaffold_1583_20
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14522..14854
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=4 Tax=Alphaproteobacteria RepID=C8WDW1_ZYMMN
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB00579.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_expt_1000_bf_scaffold_1583_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14854..15135
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=1 Tax=Nitratireductor indicus C115 RepID=K2P4F3_9RHIZ
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EKF42246.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer protein TrbB; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_1583_22
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15146..17653
DNA (2508bp) protein (836aa)
Conjugal transfer ATPase TrbE n=1 Tax=Nitratireductor indicus C115 RepID=K2NSD8_9RHIZ rbh
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:EKF42245.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_expt_1000_bf_scaffold_1583_23
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17650..18522
DNA (873bp) protein (291aa)
P-type conjugative transfer protein TrbJ n=2 Tax=Alphaproteobacteria RepID=C8WDW4_ZYMMN rbh
conjugal transfer protein TrbJ rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EKF42244.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1583_24
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18465..18740
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N4D9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42243.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_25
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18744..20105
DNA (1362bp) protein (454aa)
Conjugal transfer protein TrbL n=1 Tax=Nitratireductor indicus C115 RepID=K2PMD2_9RHIZ rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:EKF42242.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
SCNpilot_expt_1000_bf_scaffold_1583_26
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20102..20791
DNA (690bp) protein (230aa)
Conjugal transfer protein n=1 Tax=Zymomonas mobilis subsp. mobilis (strain NCIB 11163) RepID=C8WDW7_ZYMMN rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EPR17229.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_1000_bf_scaffold_1583_27
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20788..20997
DNA (210bp) protein (70aa)
P-type conjugative transfer protein TrbG n=1 Tax=Zymomonas mobilis subsp. mobilis (strain NCIB 11163) RepID=C8WDW8_ZYMMN
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KFI26668.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
Displaying 27 items

View Taxonomy