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SCNpilot_expt_1000_bf_scaffold_1596

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1596_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..496)
DNA (495bp) protein (165aa)
Aldo-keto reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EU96_9RHIZ
Aldo-keto reductase {ECO:0000313|EMBL:EYR82257.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_1596_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

726..1643
DNA (918bp) protein (306aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX00_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EYR82256.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1596_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1681..2076)
DNA (396bp) protein (132aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. CF080 RepID=J2KNR7_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EUB99390.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1596_4
unknown

Not on your lists

2314..2691
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1596_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2866..5136
DNA (2271bp) protein (757aa)
TonB-dependent siderophore receptor n=1 Tax=Rhizobium sp. CF080 RepID=J2T9D3_9RHIZ rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EUB99389.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_1000_bf_scaffold_1596_6
unknown

Not on your lists

comp(5088..5291)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1596_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5479..5901
DNA (423bp) protein (141aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J3CMW6_9RHIZ
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:EUB99388.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1596_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5913..6269
DNA (357bp) protein (119aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J3CMW6_9RHIZ
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:EUB99388.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1596_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6281..7348
DNA (1068bp) protein (356aa)
Siderophore-interacting protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NL27_9RHIZ rbh
Siderophore-interacting protein {ECO:0000313|EMBL:EKF40105.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
siderophore-interacting protein rbh
SCNpilot_expt_1000_bf_scaffold_1596_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7440..8534)
DNA (1095bp) protein (365aa)
Kef-type K+ transport system, membrane component n=2 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9WZI0_RHILT
Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:EJB01856.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
monocomponent cation/proton antiporter
SCNpilot_expt_1000_bf_scaffold_1596_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8531..9724)
DNA (1194bp) protein (398aa)
Kef-type K+ transport system, membrane component n=2 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9WZI0_RHILT
Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:EJB01856.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
monocomponent cation/proton antiporter
SCNpilot_expt_1000_bf_scaffold_1596_12
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9975..10709
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NGJ0_RHISP rbh
Uncharacterized conserved protein UCP01500 {ECO:0000313|EMBL:CDN47838.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1596_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10857..11924)
DNA (1068bp) protein (356aa)
fbpA1; iron ABC transporter nucleotide-binding protein/ATPase; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036DECBD
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF87486.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_1596_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11921..13624)
DNA (1704bp) protein (568aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000363DAD3 rbh
ABC transporter permease protein {ECO:0000313|EMBL:AJC81834.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
putative Fe3+ ABC transporter, permease component rbh
SCNpilot_expt_1000_bf_scaffold_1596_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13761..14783)
DNA (1023bp) protein (341aa)
iron ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D959D
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIC30316.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
fbpA; ABC transporter substrate-binding protein (iron); K02012 iron(III) transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1596_16
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14954..15646)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000376D360
Chemotaxis protein CheY {ECO:0000313|EMBL:KJF72784.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
response regulator receiver
SCNpilot_expt_1000_bf_scaffold_1596_17
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15643..17040)
DNA (1398bp) protein (466aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000364EA48 rbh
two-component sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_1596_18
unknown

Not on your lists

comp(17476..18021)
DNA (546bp) protein (182aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1596_19
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..19167
DNA (459bp) protein (153aa)
Monooxygenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XZS4_PARAH
monooxygenase
Monooxygenase {ECO:0000313|EMBL:AGT10792.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_1596_20
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19164..20306
DNA (1143bp) protein (381aa)
Monooxygenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z008_PARAH rbh
monooxygenase rbh
Monooxygenase {ECO:0000313|EMBL:AGT10791.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_1596_21
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20553..22343)
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000344F62F rbh
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:KGF69429.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_1000_bf_scaffold_1596_22
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22455..22973)
DNA (519bp) protein (173aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214A9_RHOPB
Acriflavine resistance protein B {ECO:0000313|EMBL:KGF69428.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_1596_23
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22949..25351)
DNA (2403bp) protein (801aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214A9_RHOPB
Acriflavine resistance protein B {ECO:0000313|EMBL:KGF69428.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_1596_24
unknown

Not on your lists

25447..25659
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1596_25
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25596..26762)
DNA (1167bp) protein (389aa)
Secretion protein HlyD n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214A8_RHOPB rbh
RND transporter {ECO:0000313|EMBL:KGF69427.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
secretion protein HlyD rbh
SCNpilot_expt_1000_bf_scaffold_1596_26
unknown

Not on your lists

27227..27445
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1596_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27657..28337)
DNA (681bp) protein (227aa)
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVU5_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KFC61699.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1596_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28679..29632
DNA (954bp) protein (318aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2WBA1_9RHIZ
Putative transcriptional regulatory protein, LysR family {ECO:0000313|EMBL:AHK46209.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_1596_29
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29699..30301
DNA (603bp) protein (201aa)
ahcY; adenosylhomocysteinase; K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J9W2_AGRRK
Adenosylhomocysteinase {ECO:0000313|EMBL:AHK46210.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1596_30
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30253..30870
DNA (618bp) protein (206aa)
ahcY; adenosylhomocysteinase; K01251 adenosylhomocysteinase [EC:3.3.1.1]
adenosylhomocysteinase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035E2A0D
Adenosylhomocysteinase {ECO:0000313|EMBL:EPE99824.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Displaying items 1-30 of 44 in total

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