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SCNpilot_expt_1000_bf_scaffold_3195

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3195_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3195_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

339..1430
DNA (1092bp) protein (364aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMP9_AGRRK rbh
braC1; amino acid ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJK88129.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3195_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1505..2398
DNA (894bp) protein (298aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ0_AGRRK rbh
braD; amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein rbh
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJK88130.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3195_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2391..3284
DNA (894bp) protein (298aa)
Branched-chain amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ1_AGRRK rbh
branched-chain amino acid ABC transporter; K01998 branched-chain amino acid transport system permease protein rbh
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EJK88131.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3195_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3277..4035
DNA (759bp) protein (253aa)
Branched-chain amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ2_AGRRK rbh
branched-chain amino acid ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein rbh
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEA03644.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3195_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4032..4754
DNA (723bp) protein (241aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ3_AGRRK rbh
braG; amino acid ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein rbh
Amino acid ABC transporter {ECO:0000313|EMBL:ACM28834.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_3195_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5292..5573
DNA (282bp) protein (94aa)
arylmalonate decarboxylase; K01799 maleate isomerase [EC:5.2.1.1]
Arylmalonate decarboxylase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ4_AGRRK
Asp/Glu racemase {ECO:0000313|EMBL:KEA03642.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3195_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5621..6361
DNA (741bp) protein (247aa)
FAD binding domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8X6_9PROT
FAD binding domain protein {ECO:0000313|EMBL:CDX32525.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
dehydrogenase flavoprotein
SCNpilot_expt_1000_bf_scaffold_3195_9
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6394..7221
DNA (828bp) protein (276aa)
kstD3; putative dehydrogenase flavoprotein (EC:1.3.99.-)
Possible 3-oxosteroid 1-dehydrogenase id=2429414 bin=GWF1_Rhodobacteraceae_65_7 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_3195_10
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7302..8057
DNA (756bp) protein (252aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003629034
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:KFI27893.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
SCNpilot_expt_1000_bf_scaffold_3195_11
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8141..9016
DNA (876bp) protein (292aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
UPI0003CFDDA8 related cluster n=1 Tax=unknown RepID=UPI0003CFDDA8
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ESZ18396.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_3195_12
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8983..9360
DNA (378bp) protein (126aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Amorphus coralli RepID=UPI00035EB210
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KEJ93904.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
SCNpilot_expt_1000_bf_scaffold_3195_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9391..10458
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000306CCFC
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:CCV12091.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
aminoglycoside phosphotransferase; K06979 rbh
SCNpilot_expt_1000_bf_scaffold_3195_14
Serratia sp. ATCC 39006, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10481..11029)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003653547
Uncharacterized protein {ECO:0000313|EMBL:ESN63619.1}; TaxID=104623 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. ATCC 39006.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3195_15
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11034..12692)
DNA (1659bp) protein (553aa)
dihydrolipoamide dehydrogenase (EC:1.16.1.1)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YYR7_PARAH
SCNpilot_expt_1000_bf_scaffold_3195_16
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12697..13995)
DNA (1299bp) protein (433aa)
dehydrogenase catalytic domain-containing protein; K09699 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] rbh
Branched-chain alpha-keto acid dehydrogenase E2 component {ECO:0000313|EMBL:ABL72820.1}; EC=2.3.1.168 {ECO:0000313|EMBL:ABL72820.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Paracoccus sp. TRP RepID=UPI000225EEF4 rbh
SCNpilot_expt_1000_bf_scaffold_3195_17
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14069..15010)
DNA (942bp) protein (314aa)
transketolase central subunit (EC:1.2.4.1); K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4]
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000382CA10
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:KFI31228.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
SCNpilot_expt_1000_bf_scaffold_3195_18
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15012..16238)
DNA (1227bp) protein (409aa)
3-methyl-2-oxobutanoate dehydrogenase (EC:1.2.4.4); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
Branched-chain alpha-keto acid dehydrogenase E1 component {ECO:0000313|EMBL:ABL72818.1}; EC=1.2.4.4 {ECO:0000313|EMBL:ABL72818.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BBC4_PARDP
SCNpilot_expt_1000_bf_scaffold_3195_19
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16600..17193)
DNA (594bp) protein (198aa)
UPI0003D026E7 related cluster n=1 Tax=unknown RepID=UPI0003D026E7
Uncharacterized protein {ECO:0000313|EMBL:ESZ03156.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3195_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17334..18353
DNA (1020bp) protein (340aa)
Transposase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKB5_9RHIZ rbh
Transposase {ECO:0000313|EMBL:EIM24407.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative IS110 family transposase, IS1111 group
SCNpilot_expt_1000_bf_scaffold_3195_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18554..20095)
DNA (1542bp) protein (514aa)
Transposase family protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QR83_9BRAD
Transposase {ECO:0000313|EMBL:KAJ34157.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
tnpA; ISL3 family transposase TnpA
SCNpilot_expt_1000_bf_scaffold_3195_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20178..20888)
DNA (711bp) protein (237aa)
Transposase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A3C1_RHIFH
nmot3; transposase
Transposase {ECO:0000313|EMBL:CCE97869.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_3195_23
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20897..21187
DNA (291bp) protein (97aa)
UPI0003D6C013 related cluster n=1 Tax=unknown RepID=UPI0003D6C013
Uncharacterized protein {ECO:0000313|EMBL:KEO52385.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3195_24
Alcanivorax sp. P2S70, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21319..22452)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. P2S70 RepID=U7FNJ2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERP85856.1}; TaxID=1397527 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. P2S70.;"
SCNpilot_expt_1000_bf_scaffold_3195_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22789..24387)
DNA (1599bp) protein (533aa)
betA; choline dehydrogenase (EC:1.1.99.1) rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:CDH82437.1}; EC=1.1.99.1 {ECO:0000313|EMBL:CDH82437.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037904F3 rbh
SCNpilot_expt_1000_bf_scaffold_3195_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24384..25025)
DNA (642bp) protein (214aa)
4-phospho-D-erythronate dehydrogenase {ECO:0000313|EMBL:CDH82438.1}; EC=1.1.1.- {ECO:0000313|EMBL:CDH82438.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
4-phospho-D-erythronate dehydrogenase n=2 Tax=Rhizobium meliloti RepID=F7XD40_SINMM
pdxR; 4-phospho-D-erythronate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3195_27
Photorhabdus luminescens, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25870..26655)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036669CE rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EYU17116.1}; TaxID=1393736 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus luminescens BA1.;"
attM_aiiB; zn-dependent hydrolase-like protein
SCNpilot_expt_1000_bf_scaffold_3195_28
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26676..28280)
DNA (1605bp) protein (535aa)
betA; choline dehydrogenase, a flavoprotein (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1]
Choline dehydrogenase, a flavoprotein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZGE8_9GAMM
Choline dehydrogenase, a flavoprotein {ECO:0000313|EMBL:EIT70807.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCNpilot_expt_1000_bf_scaffold_3195_29
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28291..28983)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003778E05
Uncharacterized protein {ECO:0000313|EMBL:KGF68027.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3195_30
Bacillus aryabhattai, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29166..30248
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036537A2 rbh
rbsB; ribose ABC transporter ribose-binding protein RbsB; K02058 simple sugar transport system substrate-binding protein
LacI family transcriptional regulator {ECO:0000313|EMBL:KJL04307.1}; TaxID=1358420 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus aryabhattai B8W22.;"
Displaying items 1-30 of 41 in total

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