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SCNpilot_expt_1000_bf_scaffold_3523

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3523_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..871
DNA (870bp) protein (290aa)
Aminotransferase class-III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENV2_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:EYR77405.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
class III aminotransferase
SCNpilot_expt_1000_bf_scaffold_3523_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

881..1810
DNA (930bp) protein (310aa)
3-keto-5-aminohexanoate cleavage enzyme {ECO:0000313|EMBL:EYR77404.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR77404.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-keto-5-aminohexanoate cleavage enzyme n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRH6_9RHIZ rbh
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3523_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1823..2851
DNA (1029bp) protein (343aa)
Acetylpolyamine aminohydrolase AphA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM15_9RHIZ rbh
Acetylpolyamine aminohydrolase AphA {ECO:0000313|EMBL:EYR77402.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
deacetylase, histone deacetylase/acetoin utilization protein
SCNpilot_expt_1000_bf_scaffold_3523_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2848..3804)
DNA (957bp) protein (319aa)
Transcriptional regulator, LysR family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C694_9RHIZ rbh
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EYR77401.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ywbI; LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3523_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3897..4307
DNA (411bp) protein (137aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00035D22D0
Putative thioesterase {ECO:0000313|EMBL:EYR77400.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3523_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4353..5498)
DNA (1146bp) protein (382aa)
Putative glucose dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S521_9BRAD
Dehydrogenase {ECO:0000313|EMBL:KFL25878.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative glucose dehydrogenase precursor rbh
SCNpilot_expt_1000_bf_scaffold_3523_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5866..6348
DNA (483bp) protein (161aa)
NTP pyrophosphohydrolase n=1 Tax=Rhizobium gallicum RepID=UPI00037DAAC1
putative NTP pyrophosphohydrolase protein
Putative NTP pyrophosphohydrolase protein {ECO:0000313|EMBL:ABC93979.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_3523_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6508..7263)
DNA (756bp) protein (252aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.69) rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULH1_SINMW rbh
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:AHK47524.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_3523_9
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8258..10408)
DNA (2151bp) protein (717aa)
diguanylate cyclase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00036C6F38 rbh
sensory box/GGDEF family protein rbh
Sensory box/GGDEF family protein {ECO:0000313|EMBL:ADY65888.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_3523_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10709..12223)
DNA (1515bp) protein (505aa)
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR83959.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR83959.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYK1_9RHIZ rbh
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II rbh
SCNpilot_expt_1000_bf_scaffold_3523_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12220..13647)
DNA (1428bp) protein (476aa)
Malonyl-CoA decarboxylase (MCD) (EC:4.1.1.9) rbh
MCD, Malonyl-CoA decarboxylase MCD n=1 Tax=Rhizobium meliloti RepID=UPI0002FBB88E rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK64739.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_3523_12
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13853..14548
DNA (696bp) protein (232aa)
Transcriptional regulator, GntR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILM0_METNO
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACL61995.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3523_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14651..15463
DNA (813bp) protein (271aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] rbh
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FA43_9RHIZ rbh
ABC transporter related protein {ECO:0000313|EMBL:EHS50229.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_3523_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15519..16328
DNA (810bp) protein (270aa)
iron siderophore-binding protein n=1 Tax=Rhizobium gallicum RepID=UPI00036BF3DC rbh
fhuD; siderophore receptor component FhuD; K02016 iron complex transport system substrate-binding protein rbh
Putative vicibactin siderophore periplasmic binding component {ECO:0000313|EMBL:CAK10553.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_3523_15
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16354..17127
DNA (774bp) protein (258aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J3C404_9RHIZ
Iron-hydroxamate transporter, permease subunit {ECO:0000313|EMBL:CDN57526.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3523_16
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17112..17807
DNA (696bp) protein (232aa)
Transmembrane vicibactin siderophore transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M7I0_RHIL3
Iron-hydroxamate transporter, permease subunit {ECO:0000313|EMBL:CDN52152.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3523_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17747..18262
DNA (516bp) protein (172aa)
iron-hydroxamate transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000367F4B6
iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
Transport system permease protein {ECO:0000313|EMBL:ACS61226.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_3523_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18343..18747
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B2FB05
Uncharacterized protein {ECO:0000313|EMBL:AJD45341.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3523_19
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18807..19220)
DNA (414bp) protein (138aa)
Lectin-like protein BA14k n=1 Tax=Rhizobium sp. RepID=L0NDK7_RHISP
Lectin-like protein BA14k {ECO:0000313|EMBL:CCF18901.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
BA14K family protein
SCNpilot_expt_1000_bf_scaffold_3523_20
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19349..19846)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BFB8_RHILV
Stress response protein YciF 2 {ECO:0000313|EMBL:AJD42619.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3523_21
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20015..21010)
DNA (996bp) protein (332aa)
LacI family transcriptional regulator n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FZA9_RHIML rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EHK77596.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
ccpA2; catabolite control protein A rbh
SCNpilot_expt_1000_bf_scaffold_3523_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21274..22110
DNA (837bp) protein (279aa)
Deoxyfructosyl-amino acid transporter periplasmic binding protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ9_RHIRD rbh
Deoxyfructosyl-amino acid transporter periplasmic binding protein {ECO:0000313|EMBL:EGP54128.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hisJ1; histidine-binding periplasmic protein HisJ rbh
SCNpilot_expt_1000_bf_scaffold_3523_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22205..23716
DNA (1512bp) protein (504aa)
Deoxyfructosyl-amino acid ABC-type membrane transporter n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ8_RHIRD rbh
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:EYR82680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
socB; deoxyfructosyl-amino acid ABC-type membrane transporter rbh
SCNpilot_expt_1000_bf_scaffold_3523_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23736..24875
DNA (1140bp) protein (380aa)
Fructosyl amino acid oxidase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ6_RHIRD rbh
Fructosyl amino acid oxidase {ECO:0000313|EMBL:EYR82682.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_3523_25
unknown

Not on your lists

24952..25065
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 25 items

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