name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_3523_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..871
|
Aminotransferase class-III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENV2_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:EYR77405.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
class III aminotransferase
|
|
SCNpilot_expt_1000_bf_scaffold_3523_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
881..1810
|
3-keto-5-aminohexanoate cleavage enzyme {ECO:0000313|EMBL:EYR77404.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR77404.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-keto-5-aminohexanoate cleavage enzyme n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRH6_9RHIZ
rbh
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1823..2851
|
Acetylpolyamine aminohydrolase AphA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM15_9RHIZ
rbh
Acetylpolyamine aminohydrolase AphA {ECO:0000313|EMBL:EYR77402.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
deacetylase, histone deacetylase/acetoin utilization protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2848..3804)
|
Transcriptional regulator, LysR family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C694_9RHIZ
rbh
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EYR77401.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ywbI; LysR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_3523_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3897..4307
|
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00035D22D0
Putative thioesterase {ECO:0000313|EMBL:EYR77400.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4353..5498)
|
Putative glucose dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S521_9BRAD
Dehydrogenase {ECO:0000313|EMBL:KFL25878.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative glucose dehydrogenase precursor
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3523_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5866..6348
|
NTP pyrophosphohydrolase n=1 Tax=Rhizobium gallicum RepID=UPI00037DAAC1
putative NTP pyrophosphohydrolase protein
Putative NTP pyrophosphohydrolase protein {ECO:0000313|EMBL:ABC93979.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6508..7263)
|
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.69)
rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULH1_SINMW
rbh
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:AHK47524.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_9
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8258..10408)
|
diguanylate cyclase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00036C6F38
rbh
sensory box/GGDEF family protein
rbh
Sensory box/GGDEF family protein {ECO:0000313|EMBL:ADY65888.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10709..12223)
|
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR83959.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR83959.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYK1_9RHIZ
rbh
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3523_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12220..13647)
|
Malonyl-CoA decarboxylase (MCD) (EC:4.1.1.9)
rbh
MCD, Malonyl-CoA decarboxylase MCD n=1 Tax=Rhizobium meliloti RepID=UPI0002FBB88E
rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK64739.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_12
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13853..14548
|
Transcriptional regulator, GntR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILM0_METNO
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACL61995.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14651..15463
|
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FA43_9RHIZ
rbh
ABC transporter related protein {ECO:0000313|EMBL:EHS50229.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15519..16328
|
iron siderophore-binding protein n=1 Tax=Rhizobium gallicum RepID=UPI00036BF3DC
rbh
fhuD; siderophore receptor component FhuD; K02016 iron complex transport system substrate-binding protein
rbh
Putative vicibactin siderophore periplasmic binding component {ECO:0000313|EMBL:CAK10553.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_15
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16354..17127
|
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J3C404_9RHIZ
Iron-hydroxamate transporter, permease subunit {ECO:0000313|EMBL:CDN57526.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_16
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17112..17807
|
Transmembrane vicibactin siderophore transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M7I0_RHIL3
Iron-hydroxamate transporter, permease subunit {ECO:0000313|EMBL:CDN52152.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17747..18262
|
iron-hydroxamate transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000367F4B6
iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
Transport system permease protein {ECO:0000313|EMBL:ACS61226.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
|
|
SCNpilot_expt_1000_bf_scaffold_3523_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18343..18747
|
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B2FB05
Uncharacterized protein {ECO:0000313|EMBL:AJD45341.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_19
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18807..19220)
|
Lectin-like protein BA14k n=1 Tax=Rhizobium sp. RepID=L0NDK7_RHISP
Lectin-like protein BA14k {ECO:0000313|EMBL:CCF18901.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
BA14K family protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_20
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19349..19846)
|
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BFB8_RHILV
Stress response protein YciF 2 {ECO:0000313|EMBL:AJD42619.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_3523_21
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20015..21010)
|
LacI family transcriptional regulator n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FZA9_RHIML
rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EHK77596.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
ccpA2; catabolite control protein A
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3523_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21274..22110
|
Deoxyfructosyl-amino acid transporter periplasmic binding protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ9_RHIRD
rbh
Deoxyfructosyl-amino acid transporter periplasmic binding protein {ECO:0000313|EMBL:EGP54128.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hisJ1; histidine-binding periplasmic protein HisJ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3523_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22205..23716
|
Deoxyfructosyl-amino acid ABC-type membrane transporter n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ8_RHIRD
rbh
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:EYR82680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
socB; deoxyfructosyl-amino acid ABC-type membrane transporter
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3523_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23736..24875
|
Fructosyl amino acid oxidase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ6_RHIRD
rbh
Fructosyl amino acid oxidase {ECO:0000313|EMBL:EYR82682.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3523_25
unknown
|
Not on your lists |
24952..25065
|
This feature has no annotations |