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SCNpilot_expt_1000_bf_scaffold_5951

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5951_1
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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35..1303
DNA (1269bp) protein (423aa)
Putative transposase for insertion sequence element n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J687_ACIMA rbh
putative transposase for insertion sequence element rbh
Putative transposase for insertion sequence element {ECO:0000313|EMBL:BAJ80343.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_expt_1000_bf_scaffold_5951_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1366..3729
DNA (2364bp) protein (788aa)
Type I site-specific deoxyribonuclease HsdR {ECO:0000313|EMBL:AJD41695.1}; EC=3.1.21.3 {ECO:0000313|EMBL:AJD41695.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
DEAD/DEAH box helicase; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
DEAD/DEAH box helicase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EF16A rbh
SCNpilot_expt_1000_bf_scaffold_5951_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3768..4658)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DIC6_SPHYA rbh
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:CDN92212.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_5951_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4708..5274)
DNA (567bp) protein (189aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCA0D rbh
Transcriptional regulator {ECO:0000313|EMBL:CDN92211.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5951_5
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5856..6473
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LPI1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA47863.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_1000_bf_scaffold_5951_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7069..7497
DNA (429bp) protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG10682.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Putative uncharacterized protein id=24470347 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SCNpilot_expt_1000_bf_scaffold_5951_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7877..9643)
DNA (1767bp) protein (589aa)
Oleate hydratase {ECO:0000313|EMBL:CDN92209.1}; EC=4.2.1.53 {ECO:0000313|EMBL:CDN92209.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000381B0F5 rbh
myosin-cross-reactive antigen; K10254 myosin-crossreactive antigen rbh
SCNpilot_expt_1000_bf_scaffold_5951_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9671..10069)
DNA (399bp) protein (133aa)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B5B06
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CDN92208.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein
SCNpilot_expt_1000_bf_scaffold_5951_9
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10176..10529)
DNA (354bp) protein (118aa)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B5B06
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein {ECO:0000313|EMBL:EZP81014.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein
SCNpilot_expt_1000_bf_scaffold_5951_10
unknown

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10630..10971
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3M6_9SPHN
SCNpilot_expt_1000_bf_scaffold_5951_11
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10983..11606)
DNA (624bp) protein (208aa)
TetR family transcriptional regulator n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037E636C rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL46238.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5951_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11762..12805
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D2J8_SPHYA rbh
Catalase {ECO:0000313|EMBL:CDN92205.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5951_13
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12896..13507
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037DA715 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGE80654.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5951_14
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13511..14884
DNA (1374bp) protein (458aa)
peroxidase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037AA26F rbh
Peroxidase {ECO:0000313|EMBL:KGE80653.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Dyp-type peroxidase family protein rbh
SCNpilot_expt_1000_bf_scaffold_5951_15
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15102..16001)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZH9_9RHIZ rbh
LysR-family transcriptional regulator {ECO:0000313|EMBL:KFL45388.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_5951_16
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16140..16913
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJF4_9RHIZ rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AJA11307.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
Short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_5951_17
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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18321..18728
DNA (408bp) protein (136aa)
Mobile element protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QC12_9RHOB
Mobile element protein {ECO:0000313|EMBL:EPX77108.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
integrase
Displaying 17 items

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