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SCNpilot_expt_1000_bf_scaffold_13646

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13646_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..328
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D479_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77961.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13646_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(293..694)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZZ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77960.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_13646_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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815..1195
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJP6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77959.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13646_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1192..2055
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZS5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR77958.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09701 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_13646_5
unknown

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2246..2374
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13646_6
unknown

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2374..2646
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13646_7
unknown

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3764..4060
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13646_8
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4224..5024
DNA (801bp) protein (267aa)
UPI0003D6AC94 related cluster n=1 Tax=unknown RepID=UPI0003D6AC94 rbh
Histidinol-phosphate phosphatase {ECO:0000313|EMBL:AHD02188.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
inositol monophosphatase rbh
SCNpilot_expt_1000_bf_scaffold_13646_9
unknown

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comp(5106..5402)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13646_10
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5618..6088
DNA (471bp) protein (157aa)
ABC transporter related; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
UPI0003D6A046 related cluster n=1 Tax=unknown RepID=UPI0003D6A046
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHD02187.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
SCNpilot_expt_1000_bf_scaffold_13646_11
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6085..7731
DNA (1647bp) protein (549aa)
UPI0003D6B433 related cluster n=1 Tax=unknown RepID=UPI0003D6B433 rbh
Iron ABC transporter permease {ECO:0000313|EMBL:AHD02186.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_13646_12
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7767..8771
DNA (1005bp) protein (335aa)
UPI0003D6C7C5 related cluster n=1 Tax=unknown RepID=UPI0003D6C7C5
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHD02185.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_13646_13
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8840..9388)
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ08754.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
Putative periplasmic ligand-binding sensor protein id=24614261 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
SCNpilot_expt_1000_bf_scaffold_13646_14
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9559..10524)
DNA (966bp) protein (322aa)
Putative replication protein C n=2 Tax=cellular organisms RepID=REPC_AGRRH
Replication initiation protein RepC {ECO:0000313|EMBL:KEA04516.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
repCa; replication protein C
Displaying 14 items

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