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SCNpilot_expt_1000_bf_scaffold_4425

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4425_1
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(47..1561)
DNA (1515bp) protein (505aa)
2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79]
2-methylcitrate dehydratase n=1 Tax=Nitratireductor indicus C115 RepID=K2N1U3_9RHIZ
2-methylcitrate dehydratase {ECO:0000313|EMBL:EKF41448.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_4425_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1724..3145
DNA (1422bp) protein (474aa)
XRE family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NQ18_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKF41450.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
XRE family transcriptional regulator; K07110
SCNpilot_expt_1000_bf_scaffold_4425_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3786..5834
DNA (2049bp) protein (683aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000379711C
SCNpilot_expt_1000_bf_scaffold_4425_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6454..6675
DNA (222bp) protein (74aa)
Glutaredoxin-like protein NrdH n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QXX8_9RHIZ
Glutaredoxin {ECO:0000313|EMBL:KDP70460.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
nrdH; glutaredoxin-C6 Glutaredoxin-C2 homolog 1; K06191 glutaredoxin-like protein NrdH
SCNpilot_expt_1000_bf_scaffold_4425_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6686..7078
DNA (393bp) protein (131aa)
Protein NrdI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENW1_9RHIZ
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nrdI; protein NrdI
SCNpilot_expt_1000_bf_scaffold_4425_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7075..9279
DNA (2205bp) protein (735aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV79_RHITR rbh
ribonucleoside-diphosphate reductase, alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_4425_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9294..10283
DNA (990bp) protein (330aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nrdF; ribonucleotide-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] rbh
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003793D05 rbh
SCNpilot_expt_1000_bf_scaffold_4425_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10706..11896
DNA (1191bp) protein (397aa)
fdhA; Glutathione-independent formaldehyde dehydrogenase (EC:1.2.1.46)
Glutathione-independent formaldehyde dehydrogenase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AAD7_RHIRD
Aldehyde dismutase {ECO:0000313|EMBL:KDR89384.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
SCNpilot_expt_1000_bf_scaffold_4425_9
unknown

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12356..12733
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4425_10
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13001..13741
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HM13_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGJ07323.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4425_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13803..14669)
DNA (867bp) protein (289aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETP0_9RHIZ
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EYR78139.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4425_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14857..17061
DNA (2205bp) protein (735aa)
Ferrichrysobactin receptor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBY2_9RHIZ rbh
Ferrichrysobactin receptor {ECO:0000313|EMBL:EYR78138.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TonB-dependent siderophore receptor
SCNpilot_expt_1000_bf_scaffold_4425_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17627..18622
DNA (996bp) protein (332aa)
Enterochelin esterase Fes n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRU1_9RHIZ
Enterochelin esterase Fes {ECO:0000313|EMBL:EYR78137.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
esterase rbh
SCNpilot_expt_1000_bf_scaffold_4425_14
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18660..18965
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2S4E3_9RHIZ
Putative conserved protein UCP028291 {ECO:0000313|EMBL:EUB99254.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein; K09956 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4425_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19568..19876
DNA (309bp) protein (103aa)
ABC-type enterochelin transport system, periplasmic component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWB0_9RHIZ
ABC-type enterochelin transport system, periplasmic component {ECO:0000313|EMBL:EYR78135.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4425_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19873..20826
DNA (954bp) protein (318aa)
Transport system permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETN6_9RHIZ
Transport system permease protein {ECO:0000313|EMBL:EYR78134.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transporter permease; K02015 iron complex transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4425_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20829..21770
DNA (942bp) protein (314aa)
ABC-type enterochelin transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J2IVT8_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUB99251.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
putative iron(III) ABC transporter permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4425_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21767..22525
DNA (759bp) protein (253aa)
putative iron(III) ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC-type enterochelin transport system, ATPase component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT15_9RHIZ
ABC-type enterochelin transport system, ATPase component {ECO:0000313|EMBL:EYR78132.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4425_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22671..23060
DNA (390bp) protein (130aa)
Creatinase {ECO:0000313|EMBL:EYR83021.1}; EC=3.5.3.3 {ECO:0000313|EMBL:EYR83021.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
creatinase (EC:3.5.3.3)
Creatinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLR2_9RHIZ
Displaying 19 items

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