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SCNpilot_expt_1000_bf_scaffold_4445

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4445_1
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1093
DNA (1092bp) protein (364aa)
Sugar ABC transporter substrate-binding protein n=2 Tax=Rhizobium etli RepID=S5STA0_RHIET
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDM61441.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
sugar ABC transporter, sugar-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4445_2
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1178..2113
DNA (936bp) protein (312aa)
ABC transporter permease n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5QD72_9RHIZ rbh
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein rbh
ABC transporter permease {ECO:0000313|EMBL:EJT06553.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_4445_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2118..2948
DNA (831bp) protein (277aa)
ABC transporter permease n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000367C36D
putative amino acid ABC transporter, permease protein
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EJL53769.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_4445_4
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2953..4011
DNA (1059bp) protein (353aa)
Glycerol-3-phosphate transporter subunit ATP-binding component of ABC superfamily n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PPP0_9RHIZ rbh
Glycerol-3-phosphate transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CCM78576.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
putative ATP-binding component of ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4445_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4113..5573)
DNA (1461bp) protein (487aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZNH6_RHILW rbh
NodT family RND efflux system outer membrane lipoprotein rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EJB05703.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_4445_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5716..6690)
DNA (975bp) protein (325aa)
Acriflavine resistance protein B n=1 Tax=Rhizobium sp. RepID=L0NI87_RHISP
Acriflavine resistance protein B {ECO:0000313|EMBL:CCF20823.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_expt_1000_bf_scaffold_4445_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6648..8786)
DNA (2139bp) protein (713aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhizobium sp. CF080 RepID=J3BQK5_9RHIZ
Multidrug efflux system protein AcrB {ECO:0000313|EMBL:CDN50076.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
acrB; acriflavin resistance protein B; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_4445_8
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8923..10134)
DNA (1212bp) protein (404aa)
Acriflavin resistance protein A n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L2R7_AGRSH rbh
acrA; acriflavin resistance protein A; K03585 membrane fusion protein rbh
Acriflavin resistance protein A {ECO:0000313|EMBL:ADY65465.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_4445_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10344..10925)
DNA (582bp) protein (194aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036957F4
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EUC01133.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4445_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11026..11970)
DNA (945bp) protein (315aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
phosphoribosylaminoimidazolesuccinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Rhizobium sp. CF142 RepID=J2LAL2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4445_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12095..13834)
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T019_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24936.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4445_12
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14172..14495
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AHN9_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE56000.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4445_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14501..14869
DNA (369bp) protein (123aa)
Response regulator protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SMP0_RHIET
response regulator protein
Response regulator protein {ECO:0000313|EMBL:AGS23322.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_4445_14
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14866..16881
DNA (2016bp) protein (672aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
CheA signal transduction histidine kinase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6H5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4445_15
unknown

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comp(16719..17039)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4445_16
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17092..17349
DNA (258bp) protein (86aa)
CheW protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VL51_9RHIZ
CheW protein {ECO:0000313|EMBL:EJZ18385.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
cheW; chemotaxis protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_1000_bf_scaffold_4445_17
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17399..18388
DNA (990bp) protein (330aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6H7_9RHIZ
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EHS51673.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
Displaying 17 items

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