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SCNpilot_expt_1000_bf_scaffold_4547

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4547_1
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..129
DNA (129bp) protein (43aa)
Putative transcriptional regulator, MerR family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZK3_9RHIZ
Plasmid replication protein RepA2 {ECO:0000313|EMBL:KFB08203.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
plasmid partitioning protein RepA
SCNpilot_expt_1000_bf_scaffold_4547_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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419..1627
DNA (1209bp) protein (403aa)
Putative replication protein C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIK4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE02341.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
repC; replication initiation protein RepC
SCNpilot_expt_1000_bf_scaffold_4547_3
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1787..3070
DNA (1284bp) protein (428aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:EKF57419.1}; EC=2.6.1.19 {ECO:0000313|EMBL:EKF57419.1};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
4-aminobutyrate aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19]
4-aminobutyrate aminotransferase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q172_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4547_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3073..4557
DNA (1485bp) protein (495aa)
gabD4; succinate-semialdehyde dehydrogenase [NADP+] GabD (EC:1.2.1.79)
Succinic semialdehyde dehydrogenase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PXH0_9RHIZ
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:EKF57420.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_4547_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4687..5256)
DNA (570bp) protein (190aa)
elongation factor P n=1 Tax=Rhizobium leguminosarum RepID=UPI000365C89F rbh
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
efp; elongation factor P (EF-P)
SCNpilot_expt_1000_bf_scaffold_4547_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5407..6471
DNA (1065bp) protein (355aa)
lysine--tRNA ligase; K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000313|EMBL:ACI57060.1}; EC=6.1.1.6 {ECO:0000313|EMBL:ACI57060.1};; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Lysine--tRNA ligase n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZU67_RHILW
SCNpilot_expt_1000_bf_scaffold_4547_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6938..7501
DNA (564bp) protein (188aa)
kamA; L-lysine 2,3-aminomutase (EC:5.4.3.2)
Lysine-2,3-aminomutase-related protein n=1 Tax=Rhizobium sp. CF080 RepID=J2IS92_9RHIZ
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:CDN56194.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_4547_8
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7814..8062
DNA (249bp) protein (83aa)
acyl carrier protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B4EA6A
Acyl carrier protein {ECO:0000313|EMBL:AJD43216.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_4547_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8062..9243
DNA (1182bp) protein (394aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
acyl-CoA dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003774F44 rbh
Acyl-CoA dehydrogenase protein {ECO:0000313|EMBL:AIC29425.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_4547_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9249..10157
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2E0_AGRVS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM39038.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4547_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10157..11140
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJJ3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR77435.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4547_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11187..12839
DNA (1653bp) protein (551aa)
Beta-mannosidase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQC5_RHITR
beta-mannosidase protein
Beta-mannosidase protein {ECO:0000313|EMBL:AGB72926.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 12 items

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