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SCNpilot_expt_1000_bf_scaffold_4555

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4555_1
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..178)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037E5AB1
Thioesterase {ECO:0000313|EMBL:AJY46211.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4555_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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425..868
DNA (444bp) protein (148aa)
Deacetylase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BFY9_RHIRD
Deacetylase {ECO:0000313|EMBL:EMS98200.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
histone deacetylase superfamily protein
SCNpilot_expt_1000_bf_scaffold_4555_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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865..1353
DNA (489bp) protein (163aa)
deacetylase; K01454 [EC:3.5.1.48]
Probable deacetylase protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KBQ8_RHIEC
Probable deacetylase protein {ECO:0000313|EMBL:ABC89728.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_4555_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1356..1625
DNA (270bp) protein (90aa)
xseB; exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
exodeoxyribonuclease VII small subunit n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000365B7C5
SCNpilot_expt_1000_bf_scaffold_4555_5
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1665..2588
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AJA5_RHIRD
Pirin {ECO:0000313|EMBL:KGE82787.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
putative Pirin family protein
SCNpilot_expt_1000_bf_scaffold_4555_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2710..4620
DNA (1911bp) protein (637aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7) rbh
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD97_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4555_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4683..5000)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TU44_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN83979.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4555_8
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5104..5484)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NAZ8_RHISP
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KJF71233.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4555_9
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5478..6044)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NAZ8_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18044.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4555_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6192..6941)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VDC0_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENN89037.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_4555_11
unknown

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7396..7662
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4555_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7717..8463
DNA (747bp) protein (249aa)
hemolysin-like protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] rbh
Hemolysin-like protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MHG2_RHISN rbh
Hemolysin-like protein {ECO:0000313|EMBL:ACP24290.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_4555_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8460..9713
DNA (1254bp) protein (418aa)
SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase n=1 Tax=Rhizobium sp. CF122 RepID=J2J0T1_9RHIZ rbh
SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase {ECO:0000313|EMBL:EJL54653.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
tRNA (Uracil-5-)-methyltransferase superfamily
SCNpilot_expt_1000_bf_scaffold_4555_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9853..10599)
DNA (747bp) protein (249aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JSK4_AGRVS
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ACM35697.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4555_15
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10596..12371)
DNA (1776bp) protein (592aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Rhizobium gallicum RepID=UPI00037D8E9C
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EPE99414.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_4555_16
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12506..14143
DNA (1638bp) protein (546aa)
Mg2+/Co2+ transporter n=1 Tax=Rhizobium sp. CF080 RepID=J3C5P3_9RHIZ
Mg2 transporter protein CorA family protein {ECO:0000313|EMBL:CDN46691.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
magnesium and cobalt transporter protein; K16074 zinc transporter
SCNpilot_expt_1000_bf_scaffold_4555_17
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14377..14634
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VSF5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ20450.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
Displaying 17 items

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