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SCNpilot_expt_1000_bf_scaffold_4952

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4952_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..755)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3T6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN85722.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4952_2
unknown

Not on your lists

comp(987..1694)
DNA (708bp) protein (236aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4952_3
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2293..2676)
DNA (384bp) protein (128aa)
Response regulator receiver protein n=2 Tax=Rhizobium/Agrobacterium group RepID=H4FC94_9RHIZ
Chemotaxis response regulator {ECO:0000313|EMBL:EKF58807.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
two-component response regulator protein; K13589 two-component system, cell cycle response regulator CpdR
SCNpilot_expt_1000_bf_scaffold_4952_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2858..3742
DNA (885bp) protein (295aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhizobium sp. CF142 RepID=J1T4R5_9RHIZ rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EJJ26641.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
N-formylglutamate amidohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_4952_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3985..4758
DNA (774bp) protein (258aa)
Putative Inositol monophosphatase family protein {ECO:0000313|EMBL:CCF20466.1}; EC=3.1.3.25 {ECO:0000313|EMBL:CCF20466.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
Putative Inositol monophosphatase family protein n=1 Tax=Rhizobium sp. RepID=L0NI22_RHISP rbh
inositol monophosphatase family protein
SCNpilot_expt_1000_bf_scaffold_4952_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4865..5836)
DNA (972bp) protein (324aa)
lysophospholipase (EC:3.1.1.5); K01048 lysophospholipase [EC:3.1.1.5]
lysophospholipase n=1 Tax=Rhizobium mongolense RepID=UPI0003B601DE
Lysophospholipase protein {ECO:0000313|EMBL:AJD42779.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_4952_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6226..6714
DNA (489bp) protein (163aa)
HSP20 family small heat shock protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNW8_RHITR
HSP20 family small heat shock protein
HSP20 family small heat shock protein {ECO:0000313|EMBL:AGB72411.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4952_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6778..7764)
DNA (987bp) protein (329aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037B1A63
Membrane protein {ECO:0000313|EMBL:AHF85633.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
transmembrane protein; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
SCNpilot_expt_1000_bf_scaffold_4952_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7859..8368
DNA (510bp) protein (170aa)
Probable transcriptional regulator protein, LysR family n=3 Tax=Rhizobium RepID=B3PZW1_RHIE6
LysR family transcriptional regulator protein {ECO:0000313|EMBL:AJD42776.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4952_10
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8431..8694
DNA (264bp) protein (88aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VHB1_9RHIZ
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:EJZ18321.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_4952_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8695..9750)
DNA (1056bp) protein (352aa)
threonine aldolase (EC:4.1.2.5); K01620 threonine aldolase [EC:4.1.2.5]
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
threonine aldolase n=1 Tax=Rhizobium gallicum RepID=UPI00035EF7DC
SCNpilot_expt_1000_bf_scaffold_4952_12
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10320..14096
DNA (3777bp) protein (1259aa)
gltB; glutamate synthase large subunit protein; K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase family protein n=1 Tax=Rhizobium sp. CF122 RepID=J2I8U0_9RHIZ
Glutamate synthase family protein {ECO:0000313|EMBL:EJL52415.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_4952_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14083..14874
DNA (792bp) protein (264aa)
gltB; glutamate synthase large subunit; K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase large subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JS58_AGRVS
Glutamate synthase {ECO:0000313|EMBL:KGD92031.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_4952_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14934..16388
DNA (1455bp) protein (485aa)
Glutamate synthase subunit beta n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V8P9_9RHIZ
Glutamate synthase subunit beta {ECO:0000313|EMBL:ENN87397.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
glutamate synthase small subunit protein
SCNpilot_expt_1000_bf_scaffold_4952_15
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16449..16826)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D3503
hypothetical protein; K09795 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJT03992.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_4952_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16823..17212)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000377D75B
Lipoprotein {ECO:0000313|EMBL:KGD92033.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein; K09795 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4952_17
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17648..18868)
DNA (1221bp) protein (407aa)
Lytic murein transglycosylase n=1 Tax=Rhizobium sp. AP16 RepID=J2CRP0_9RHIZ rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:EJK79704.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
membrane-bound lytic murein transglycosylase rbh
SCNpilot_expt_1000_bf_scaffold_4952_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19092..19976
DNA (885bp) protein (295aa)
UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] rbh
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003614530 rbh
SCNpilot_expt_1000_bf_scaffold_4952_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20031..21614)
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLW1_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB72398.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4952_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21784..22779
DNA (996bp) protein (332aa)
KpsF/GutQ family protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DAI9_9RHIZ rbh
kpsF; polysialic acid capsule expression protein rbh
D-arabinose 5-phosphate {ECO:0000313|EMBL:KEA05747.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4952_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22794..23237)
DNA (444bp) protein (148aa)
Putative membrane protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PZV0_RHIE6
hypothetical protein; K07340 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEC74551.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_expt_1000_bf_scaffold_4952_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23242..24255)
DNA (1014bp) protein (338aa)
Protein QmcA n=2 Tax=Rhizobium etli RepID=S5SMR8_RHIET rbh
membrane protease subunit protein rbh
Protein QmcA {ECO:0000313|EMBL:AGS23357.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_4952_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24352..25392)
DNA (1041bp) protein (347aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hemH; ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MIN3_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_4952_24
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25545..27455)
DNA (1911bp) protein (637aa)
5'-nucleotidase domain-containing protein; K01081 5'-nucleotidase [EC:3.1.3.5]
5''''-nucleotidase n=1 Tax=Rhizobium mongolense RepID=UPI0003B34139
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase {ECO:0000313|EMBL:EJL52430.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_4952_25
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27684..28067)
DNA (384bp) protein (128aa)
Putative outer membrane lipoprotein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U437_9RHIZ
Putative outer membrane lipoprotein {ECO:0000313|EMBL:ENN87384.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
outer membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_4952_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28268..29695)
DNA (1428bp) protein (476aa)
Homospermidine synthase Hss {ECO:0000313|EMBL:EYR77344.1}; EC=2.5.1.44 {ECO:0000313|EMBL:EYR77344.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hss; probabable homospermidine synthase protein; K00808 homospermidine synthase [EC:2.5.1.44] rbh
Homospermidine synthase Hss n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHC2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4952_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29837..30745)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2KX68_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA05756.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4952_28
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31046..31672)
DNA (627bp) protein (209aa)
hypothetical protein; K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QUI1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF58777.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_4952_29
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31657..32817)
DNA (1161bp) protein (387aa)
Aminodeoxychorismate synthase, component I n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNU4_RHITR
pabB; aminodeoxychorismate synthase, component I
Aminodeoxychorismate synthase, component I {ECO:0000313|EMBL:AGB72386.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4952_30
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32880..33311)
DNA (432bp) protein (144aa)
Oligoendopeptidase F protein {ECO:0000313|EMBL:CCM76388.1}; EC=3.4.24.- {ECO:0000313|EMBL:CCM76388.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
oligoendopeptidase; K08602 oligoendopeptidase F [EC:3.4.24.-]
Oligoendopeptidase F protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PRC1_9RHIZ
Displaying items 1-30 of 32 in total

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