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SCNpilot_expt_1000_bf_scaffold_6396

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6396_1
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..794)
DNA (792bp) protein (264aa)
Type VI secretion protein, VC_A0110 family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EIH5_METSB
Uncharacterized protein {ECO:0000313|EMBL:KJS08456.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
type VI secretion protein; K11896 type VI secretion system protein ImpG
SCNpilot_expt_1000_bf_scaffold_6396_2
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(791..1210)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000362D66E
Uncharacterized protein {ECO:0000313|EMBL:KJS08455.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
SCNpilot_expt_1000_bf_scaffold_6396_3
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1549..2037)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DV38_PSEMN
Uncharacterized protein {ECO:0000313|EMBL:KJS08454.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
SCNpilot_expt_1000_bf_scaffold_6396_4
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2208..3698)
DNA (1491bp) protein (497aa)
EvpB family type VI secretion protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E38992
EvpB family type VI secretion protein {ECO:0000313|EMBL:KJS08453.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
EvpB family type VI secretion protein; K11900 type VI secretion system protein ImpC
SCNpilot_expt_1000_bf_scaffold_6396_5
bacterium YEK0313, Bacteria

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comp(3719..4261)
DNA (543bp) protein (181aa)
Bll3594 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89P89_BRADU
Uncharacterized protein {ECO:0000313|EMBL:CEJ14874.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
SCNpilot_expt_1000_bf_scaffold_6396_6
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..6387)
DNA (531bp) protein (177aa)
OmpA/MotB domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILZ0_METNO
Uncharacterized protein {ECO:0000313|EMBL:KJS08451.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6396_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6484..8559)
DNA (2076bp) protein (692aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZV0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78248.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07126
SCNpilot_expt_1000_bf_scaffold_6396_8
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8659..9912)
DNA (1254bp) protein (418aa)
UPI0003D01462 related cluster n=1 Tax=unknown RepID=UPI0003D01462 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY90714.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6396_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10045..11187)
DNA (1143bp) protein (381aa)
UPI0003CFF20C related cluster n=1 Tax=unknown RepID=UPI0003CFF20C rbh
Glycosyltransferase {ECO:0000313|EMBL:EYR78247.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_6396_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11184..11477)
DNA (294bp) protein (98aa)
Glycosyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBZ9_9RHIZ
Glycosyltransferase {ECO:0000313|EMBL:EYR78246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_6396_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11434..13413)
DNA (1980bp) protein (660aa)
Glycosyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBZ9_9RHIZ rbh
Glycosyltransferase {ECO:0000313|EMBL:EYR78246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycosyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_6396_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13410..13847)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRV9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78245.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6396_13
unknown

Not on your lists

15122..15592
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6396_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16432..19635
DNA (3204bp) protein (1068aa)
Peptide synthetase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXX6_9RHIZ
Peptide synthetase {ECO:0000313|EMBL:ENN86520.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
non-ribosomal peptide synthetase
Displaying 14 items

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