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SCNpilot_expt_1000_bf_scaffold_6458

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6458_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..514)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5P8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN89155.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
VWA domain-containing CoxE-like protein
SCNpilot_expt_1000_bf_scaffold_6458_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(522..794)
DNA (273bp) protein (91aa)
ATPase n=1 Tax=Rhizobium mongolense RepID=UPI0003B44FF9
Oligopeptide ABC transporter {ECO:0000313|EMBL:EKF59713.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
oligopeptide ABC transporter
SCNpilot_expt_1000_bf_scaffold_6458_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

907..1467
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:KDP74732.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_6458_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1462..1956)
DNA (495bp) protein (165aa)
4-hydroxyphenylacetate 3-monooxygenase small chain protein (EC:1.14.13.3); K13786 cob(II)yrinic acid a,c-diamide reductase [EC:1.16.8.1]
Flavoprotein oxidoreductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QWJ6_9RHIZ
Flavoprotein oxidoreductase {ECO:0000313|EMBL:EKF59712.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_6458_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2160..3248
DNA (1089bp) protein (363aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2APE6_9RHIZ rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJJ25085.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6458_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3304..3981
DNA (678bp) protein (226aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cbbE; Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D136_RHILU
SCNpilot_expt_1000_bf_scaffold_6458_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4216..4494
DNA (279bp) protein (93aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D314C
Uncharacterized protein {ECO:0000313|EMBL:EJC66583.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_6458_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4571..5854
DNA (1284bp) protein (428aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
purB; Adenylosuccinate lyase (Adenylosuccinase) (ASL) (EC:4.3.2.2)
Adenylosuccinate lyase PurB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM51_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6458_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5896..6450
DNA (555bp) protein (185aa)
Putative esterase of the alpha/beta hydrolase fold containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW11_9RHIZ
Putative esterase of the alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EYR79083.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07002
SCNpilot_expt_1000_bf_scaffold_6458_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6545..7906
DNA (1362bp) protein (454aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2R697_9RHIZ
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:CDN47914.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_6458_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7906..9066
DNA (1161bp) protein (387aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2R697_9RHIZ
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EUB95675.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
sensory box/GGDEF family protein
SCNpilot_expt_1000_bf_scaffold_6458_12
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9114..9428)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2IHF7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95676.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9809..10573
DNA (765bp) protein (255aa)
purC1; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Rhizobium etli RepID=B3PP56_RHIE6
SCNpilot_expt_1000_bf_scaffold_6458_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10591..10833
DNA (243bp) protein (81aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
purS; phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase, purS protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HX73_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6458_15
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10851..11096
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAS9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEQ11104.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11093..11764
DNA (672bp) protein (224aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=106592 species=
purQ; phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Rhizobium sp. CF122 RepID=J2J8T0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6458_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11800..12210
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8U8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP56744.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12318..12599)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8U7_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDN94349.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_19
unknown

Not on your lists

12694..12795
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 19 items

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