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SCNpilot_expt_1000_bf_scaffold_24246

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_24246_1
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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comp(3..554)
DNA (552bp) protein (184aa)
ISxac3 transposase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CBI1_9RHOB
Transposase {ECO:0000313|EMBL:KIY12891.1}; Flags: Fragment;; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_24246_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1437..1637
DNA (201bp) protein (67aa)
Protein translocase subunit SecE n=3 Tax=Agrobacterium RepID=Q7CY67_AGRT5
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_24246_3
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1656..2186
DNA (531bp) protein (177aa)
transcription antitermination protein NusG n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035FFBC9
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
nusG; Transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
SCNpilot_expt_1000_bf_scaffold_24246_4
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2432..2758
DNA (327bp) protein (109aa)
50S ribosomal protein L11 n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYT1_9RHIZ
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
rplK; 50S ribosomal protein L11
SCNpilot_expt_1000_bf_scaffold_24246_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2760..3458
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Rhizobium sp. RepID=L0NEA0_RHISP
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_expt_1000_bf_scaffold_24246_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3977..4288
DNA (312bp) protein (104aa)
50S ribosomal protein L10 n=1 Tax=Rhizobium giardinii RepID=UPI00036E9280
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_24246_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4432..4725
DNA (294bp) protein (98aa)
50S ribosomal protein L7/L12 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FEB3_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
rplL; putative 50S ribosomal protein L7/L12 (L8)
SCNpilot_expt_1000_bf_scaffold_24246_8
Bradyrhizobium sp. SEMIA 6002, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4830..6035)
DNA (1206bp) protein (402aa)
RNA polymerase beta subunit (Fragment) n=1 Tax=Bradyrhizobium sp. SEMIA 6002 RepID=F5B5B4_9BRAD rbh
RNA polymerase beta subunit {ECO:0000313|EMBL:AEC49863.1}; Flags: Fragment;; TaxID=1005742 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. SEMIA 6002.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_24246_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6389..6694
DNA (306bp) protein (102aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
DNA-directed RNA polymerase subunit beta n=4 Tax=Agrobacterium RepID=M8AD95_RHIRD
Displaying 9 items

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