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SCNpilot_expt_1000_bf_scaffold_2320

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2320_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..509
DNA (507bp) protein (169aa)
Inositol 2-dehydrogenase {ECO:0000313|EMBL:CDX38406.1}; EC=1.1.1.18 {ECO:0000313|EMBL:CDX38406.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
oxidoreductase domain-containing protein (EC:1.1.1.18); K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18]
Myo-inositol dehydrogenase (IdhA) n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7B4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2320_2
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

882..1676
DNA (795bp) protein (265aa)
UPI0003CE40BC related cluster n=1 Tax=unknown RepID=UPI0003CE40BC rbh
Short chain dehydrogenase {ECO:0000313|EMBL:CDX37297.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_2320_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1811..2077
DNA (267bp) protein (89aa)
Prevent-host-death protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLQ8_9RHIZ
Prevent-host-death protein {ECO:0000313|EMBL:ESX81113.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
prevent-host-death family protein
SCNpilot_expt_1000_bf_scaffold_2320_4
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2074..2496
DNA (423bp) protein (141aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Ribonuclease VapC n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F0Y9_9RHIZ
twitching motility protein PilT; K07062
SCNpilot_expt_1000_bf_scaffold_2320_5
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2551..2793
DNA (243bp) protein (81aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_2320_6
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3021..4112
DNA (1092bp) protein (364aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7B6_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2320_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4180..4812)
DNA (633bp) protein (211aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y310_MESOW rbh
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:CDX19456.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
lysine exporter protein LysE/YggA rbh
SCNpilot_expt_1000_bf_scaffold_2320_8
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4941..5495
DNA (555bp) protein (185aa)
Helix-turn-helix type 11 domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y311_MESOW
Helix-turn-helix type 11 domain-containing protein
Helix-turn-helix type 11 domain protein {ECO:0000313|EMBL:AEH84978.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2320_9
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5694..6875)
DNA (1182bp) protein (394aa)
Complete genome; segment 4/17 n=1 Tax=Photorhabdus luminescens subsp. laumondii (strain TT01) RepID=Q7N832_PHOLL rbh
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:ETY80224.1}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2320_10
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7001..8500
DNA (1500bp) protein (500aa)
Transcriptional regulator with HTH domain and aminotransferase domain containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T7G9_9RHIZ rbh
Transcriptional regulator GntR family {ECO:0000313|EMBL:AJK50275.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
putative transcriptional regulatory protein,GntR family, with a PLP-dependent aminotransferase domain; putative signal peptide
SCNpilot_expt_1000_bf_scaffold_2320_11
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8523..9407)
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7B7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX21250.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2320_12
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9404..9610)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1G6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX37243.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2320_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9747..10028
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EW25_9RHIZ
Sugar isomerase (SIS) {ECO:0000313|EMBL:CDX38484.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar isomerase (SIS)
SCNpilot_expt_1000_bf_scaffold_2320_14
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10201..10602
DNA (402bp) protein (134aa)
UPI0003CED0B4 related cluster n=1 Tax=unknown RepID=UPI0003CED0B4
transcriptional regulator
Sugar isomerase {ECO:0000313|EMBL:ESY62178.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_2320_15
unknown

Not on your lists

10966..11604
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2320_16
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(11783..12127)
DNA (345bp) protein (115aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TJE9_RICCO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF24015.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_1000_bf_scaffold_2320_17
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12457..12723
DNA (267bp) protein (89aa)
UPI0003D0670D related cluster n=1 Tax=unknown RepID=UPI0003D0670D
5-dehydro-2-deoxygluconokinase {ECO:0000313|EMBL:ESZ22662.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2320_18
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12777..14609
DNA (1833bp) protein (611aa)
iolD protein; K03336 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [EC:3.7.1.-]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037854EC
IolD protein {ECO:0000313|EMBL:AAK23280.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_2320_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14766..15686
DNA (921bp) protein (307aa)
Rhizopine catabolism protein mocC n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EW41_9RHIZ rbh
Rhizopine catabolism protein MocC {ECO:0000313|EMBL:CDX38475.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar phosphate isomerase/epimerase rbh
SCNpilot_expt_1000_bf_scaffold_2320_20
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15801..16013
DNA (213bp) protein (71aa)
UPI0003CF708D related cluster n=1 Tax=unknown RepID=UPI0003CF708D
Uncharacterized protein {ECO:0000313|EMBL:CDX37252.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2320_21
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16267..17079
DNA (813bp) protein (271aa)
hypothetical protein; K03337 5-deoxy-glucuronate isomerase [EC:5.3.1.-] rbh
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCF3_MESCW rbh
5-deoxy-glucuronate isomerase {ECO:0000313|EMBL:CDX21264.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_2320_22
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17305..18012
DNA (708bp) protein (236aa)
UPI0003CEF76A related cluster n=1 Tax=unknown RepID=UPI0003CEF76A rbh
Phosphonate metabolism protein {ECO:0000313|EMBL:ESY62184.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
phosphonate metabolism protein rbh
SCNpilot_expt_1000_bf_scaffold_2320_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18044..19183
DNA (1140bp) protein (380aa)
Phosphonate metabolism protein PhnM n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7C5_9RHIZ rbh
Carbon-phosphorus lyase complex subunit {ECO:0000313|EMBL:CDX37258.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
phosphonate metabolism protein PhnM rbh
SCNpilot_expt_1000_bf_scaffold_2320_24
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19180..19806
DNA (627bp) protein (209aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; K05774 ribose 1,5-bisphosphokinase [EC:2.7.4.23] rbh
UPI0003D055A1 related cluster n=1 Tax=unknown RepID=UPI0003D055A1 rbh
SCNpilot_expt_1000_bf_scaffold_2320_25
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20174..20983
DNA (810bp) protein (270aa)
Extracellular solute-binding protein family 3 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y412_MESOW rbh
family 3 extracellular solute-binding protein rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:AEH84989.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2320_26
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21088..21753
DNA (666bp) protein (222aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y413_MESOW rbh
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEH84990.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2320_27
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21757..22449
DNA (693bp) protein (231aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y414_MESOW rbh
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEH84991.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2320_28
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22465..23346)
DNA (882bp) protein (294aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y415_MESOW rbh
SMP-30/Gluconolaconase/LRE domain-containing protein rbh
SMP-30/Gluconolaconase/LRE domain protein {ECO:0000313|EMBL:AEH84992.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2320_29
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23381..25333)
DNA (1953bp) protein (651aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000370E55E rbh
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:AID33839.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2320_30
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25343..26002)
DNA (660bp) protein (220aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y418_MESOW
ABC transporter related protein {ECO:0000313|EMBL:AEH84995.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying items 1-30 of 51 in total

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