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SCNpilot_expt_1000_bf_scaffold_2515

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2515_1
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..417)
DNA (417bp) protein (139aa)
RNA polymerase sigma-54 factor n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCQ6_MESCW
RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2515_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(615..1433)
DNA (819bp) protein (273aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] rbh
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIM6_9RHIZ rbh
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CCV16231.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_2515_3
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1433..2023)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FG08_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV16232.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_1000_bf_scaffold_2515_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2010..2723)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMH8_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV05343.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC rbh
SCNpilot_expt_1000_bf_scaffold_2515_5
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2979..3929
DNA (951bp) protein (317aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-] rbh
Signal peptide peptidase SppA, 36K type n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FMH5_9RHIZ rbh
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:CCV16234.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_2515_6
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4008..4292
DNA (285bp) protein (95aa)
Integration host factor subunit beta n=10 Tax=Mesorhizobium RepID=IHFB_RHILO
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_expt_1000_bf_scaffold_2515_7
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4327..4659
DNA (333bp) protein (111aa)
Uncharacterized protein n=3 Tax=Mesorhizobium RepID=V7F4A1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX32588.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2515_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4781..5743
DNA (963bp) protein (321aa)
ornithine cyclodeaminase n=1 Tax=Rhizobium loti RepID=UPI000376FA3B rbh
Shikimate / quinate 5-dehydrogenase family protein {ECO:0000313|EMBL:AID32504.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
putative ornithine cyclodeaminase, mu-crystallin
SCNpilot_expt_1000_bf_scaffold_2515_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5863..6279)
DNA (417bp) protein (139aa)
UPI0003CF0B99 related cluster n=1 Tax=unknown RepID=UPI0003CF0B99
UPF0310 protein MPL3356_200027 {ECO:0000256|HAMAP-Rule:MF_00771}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2515_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6279..6656)
DNA (378bp) protein (126aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCP7_MESCW
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADV10889.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2515_11
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6727..7506)
DNA (780bp) protein (260aa)
DNA-binding protein n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7F6T9_9RHIZ rbh
Helix-turn-helix type 11 domain-containing protein {ECO:0000313|EMBL:CDX24065.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
Helix-turn-helix type 11 domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2515_12
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7507..8145)
DNA (639bp) protein (213aa)
Peptide chain release factor H n=1 Tax=Rhizobium sp. Pop5 RepID=K0W213_9RHIZ
Peptide chain release factor H {ECO:0000313|EMBL:EJZ17704.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
peptide chain release factor H; K02839 peptide chain release factor
SCNpilot_expt_1000_bf_scaffold_2515_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8105..9274)
DNA (1170bp) protein (390aa)
Release factor H-coupled RctB family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C3N5_RHILT rbh
Release factor H-coupled RctB family protein {ECO:0000313|EMBL:EJC77482.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
release factor H-coupled RctB family protein rbh
SCNpilot_expt_1000_bf_scaffold_2515_14
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10151..10522
DNA (372bp) protein (124aa)
SAM dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM dependent methyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4V3_9RHIZ
SAM dependent methyltransferase {ECO:0000313|EMBL:EHH13188.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_2515_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10510..11055
DNA (546bp) protein (182aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM dependent methyltransferase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMH1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX16033.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_2515_16
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11057..11908
DNA (852bp) protein (284aa)
rRNA methylase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FMH6_9RHIZ
rRNA methylase {ECO:0000313|EMBL:CCV16239.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
rRNA methylase rbh
SCNpilot_expt_1000_bf_scaffold_2515_17
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11925..12410
DNA (486bp) protein (162aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
UPI0003CE8CA3 related cluster n=1 Tax=unknown RepID=UPI0003CE8CA3
SCNpilot_expt_1000_bf_scaffold_2515_18
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12461..13450
DNA (990bp) protein (330aa)
Quinone oxidoreductase, YhdH/YhfP family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCP2_MESCW
YhdH/YhfP family quinone oxidoreductase
Quinone oxidoreductase, YhdH/YhfP family {ECO:0000313|EMBL:ADV10884.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2515_19
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13667..14953
DNA (1287bp) protein (429aa)
UPI0003CF293F related cluster n=1 Tax=unknown RepID=UPI0003CF293F
Chemotaxis protein CheY {ECO:0000313|EMBL:ESW89881.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
PAS/PAC sensor hybrid histidine kinase
Displaying 19 items

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