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SCNpilot_expt_1000_bf_scaffold_2709

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2709_1
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..186
DNA (186bp) protein (62aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC0_MESCW
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ADV14486.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2709_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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240..1250
DNA (1011bp) protein (337aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC1_MESCW
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDX59882.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2709_3
unknown

Not on your lists

comp(1312..1671)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2709_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2640..3332
DNA (693bp) protein (231aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC2_MESCW
Inner-membrane translocator {ECO:0000313|EMBL:CDX32895.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2709_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3329..4417
DNA (1089bp) protein (363aa)
NHL repeat containing protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC3_MESCW
NHL repeat containing protein {ECO:0000313|EMBL:CDX46710.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
NHL repeat containing protein
SCNpilot_expt_1000_bf_scaffold_2709_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4420..5913
DNA (1494bp) protein (498aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:CDX32899.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX32899.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC4_MESCW
ABC transporter
SCNpilot_expt_1000_bf_scaffold_2709_7
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5986..6885
DNA (900bp) protein (300aa)
LysR substrate-binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC5_MESCW
LysR substrate-binding protein {ECO:0000313|EMBL:CDX46714.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2709_8
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6908..8395)
DNA (1488bp) protein (496aa)
aldehyde dehydrogenase (acceptor) (EC:1.2.99.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Aldehyde dehydrogenase (Acceptor) n=1 Tax=Ruegeria mobilis F1926 RepID=R0FIN6_9RHOB rbh
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:KJZ21783.1}; TaxID=379347 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria mobilis.;"
SCNpilot_expt_1000_bf_scaffold_2709_9
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8639..9385
DNA (747bp) protein (249aa)
3-ketoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100) rbh
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AGT10364.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AGT10364.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XSD4_PARAH rbh
SCNpilot_expt_1000_bf_scaffold_2709_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9409..10509
DNA (1101bp) protein (367aa)
3-isopropylmalate/3-methylmalate dehydrogenase {ECO:0000313|EMBL:CDX59864.1}; EC=1.1.1.83 {ECO:0000313|EMBL:CDX59864.1};; EC=1.1.1.85 {ECO:0000313|EMBL:CDX59864.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC8_MESCW
SCNpilot_expt_1000_bf_scaffold_2709_11
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10493..11122)
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W2T3_9BURK
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EGF30843.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
yhgD; TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2709_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11271..11723)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJP8_PSEUX
hypothetical protein; K07068
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_2709_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11765..12943)
DNA (1179bp) protein (393aa)
propanoyl-CoA C-acyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Propanoyl-CoA C-acyltransferase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJP7_PSEUX rbh
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_expt_1000_bf_scaffold_2709_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12940..14100)
DNA (1161bp) protein (387aa)
Propanoyl-CoA C-acyltransferase id=4051060 bin=GWF2_Methylomirabilis_70_14 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
propanoyl-CoA C-acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_2709_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14120..15277)
DNA (1158bp) protein (386aa)
Putative acyl-CoA transferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3K3_AZOL4 rbh
putative acyl-CoA transferase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_2709_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15274..16143)
DNA (870bp) protein (290aa)
Cyclase family protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJQ1_PSEUX
cyclase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_2709_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16140..17765)
DNA (1626bp) protein (542aa)
Putative AMP-dependent synthetase and ligase id=3198385 bin=GWF2_Methylomirabilis_70_14 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
long-chain-fatty-acid--CoA ligase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_2709_18
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17871..18800)
DNA (930bp) protein (310aa)
LysR family regulatory protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7WCH7_BORPA
LysR family transcriptional regulator {ECO:0000313|EMBL:KER69864.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
LysR family regulatory protein
SCNpilot_expt_1000_bf_scaffold_2709_19
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20331..21134
DNA (804bp) protein (268aa)
hydantoin utilization protein A n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002627D76
Putative hydantoin utilization protein A {ECO:0000313|EMBL:AIJ22453.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
hydantoin utilization protein A
SCNpilot_expt_1000_bf_scaffold_2709_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

21148..22140
DNA (993bp) protein (331aa)
N-methylhydantoinase B {ECO:0000313|EMBL:EHN10513.1}; EC=3.5.2.14 {ECO:0000313|EMBL:EHN10513.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14]
N-methylhydantoinase B n=1 Tax=Patulibacter medicamentivorans RepID=H0E718_9ACTN
Displaying 20 items

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