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SCNpilot_expt_1000_bf_scaffold_2744

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2744_1
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2..1366)
DNA (1365bp) protein (455aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EGK07767.1}; EC=1.2.1.16 {ECO:0000313|EMBL:EGK07767.1};; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="Desmospora sp. 8437.;"
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase n=1 Tax=Desmospora sp. 8437 RepID=F5SKH1_9BACL
SCNpilot_expt_1000_bf_scaffold_2744_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1456..1962)
DNA (507bp) protein (169aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_expt_1000_bf_scaffold_2744_3
Mycobacterium nebraskense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1996..2478)
DNA (483bp) protein (161aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
2Fe-2S iron-sulfur cluster-binding domain protein n=1 Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5PB85_9MYCO
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KKC02023.1}; TaxID=244292 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium nebraskense.;"
SCNpilot_expt_1000_bf_scaffold_2744_4
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(2475..3350)
DNA (876bp) protein (292aa)
carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M) (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M) {ECO:0000313|EMBL:ACM07282.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ACM07282.1};; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M) n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4R3_THERP
SCNpilot_expt_1000_bf_scaffold_2744_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3347..5668)
DNA (2322bp) protein (774aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUV4_RUBXD
Uncharacterized protein {ECO:0000313|EMBL:ETW99869.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCNpilot_expt_1000_bf_scaffold_2744_6
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(5672..6715)
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FVW7_RHIML
hypothetical protein
Tax=RBG_19FT_COMBO_JS1_35_14_curated
SCNpilot_expt_1000_bf_scaffold_2744_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6846..7817
DNA (972bp) protein (324aa)
Transcriptional regulator, LysR family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRK2_PSEUU
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADV26733.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_expt_1000_bf_scaffold_2744_8
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7938..9593
DNA (1656bp) protein (552aa)
UPI0003D0061C related cluster n=1 Tax=unknown RepID=UPI0003D0061C
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:KFB09006.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
glucose-methanol-choline oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2744_9
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

9620..9979
DNA (360bp) protein (120aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Patulibacter medicamentivorans RepID=H0DZY4_9ACTN
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EHN13088.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
SCNpilot_expt_1000_bf_scaffold_2744_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9927..10382
DNA (456bp) protein (152aa)
enoyl-CoA hydratase (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase/isomerase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9W0_THEAQ
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2744_11
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10524..11048
DNA (525bp) protein (175aa)
flavin reductase n=1 Tax=Cupriavidus sp. WS RepID=UPI000380DF39
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ65274.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_2744_12
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11062..11958
DNA (897bp) protein (299aa)
Amidohydrolase 2 n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QN23_BRESC rbh
amidohydrolase 2; K07046 rbh
Amidohydrolase 2 {ECO:0000313|EMBL:ADL02179.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_2744_13
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12096..12569)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000349CDA6
Dehydratase {ECO:0000313|EMBL:KFD42082.1}; TaxID=1487582 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2_3.;"
acyl dehydratase
SCNpilot_expt_1000_bf_scaffold_2744_14
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12569..13756)
DNA (1188bp) protein (396aa)
acetyl-CoA synthetase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003789A69
Acyl-CoA synthetase (NDP forming) {ECO:0000313|EMBL:EIG59945.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative acetyl-CoA synthetase; K09181 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2744_15
unknown

Not on your lists

13807..14085
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2744_16
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14906..15652)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI0003805F35
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AIJ23909.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2744_17
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15726..16526)
DNA (801bp) protein (267aa)
ABC transporter ATP-binding protein n=1 Tax=Amycolatopsis methanolica RepID=UPI0003798BB6
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIJ23910.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2744_18
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16523..17542)
DNA (1020bp) protein (340aa)
NMT1/THI5 like domain-containing protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQ87_9RHIZ
NMT1/THI5 like domain-containing protein {ECO:0000313|EMBL:EIM71739.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
h16_A2383; ABC-type transporter, periplasmic component; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2744_19
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17566..18567)
DNA (1002bp) protein (334aa)
2-nitropropane dioxygenase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XHN9_9RALS rbh
probable nitronate monooxygenase-like rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:EON18823.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
SCNpilot_expt_1000_bf_scaffold_2744_20
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18991..20250
DNA (1260bp) protein (420aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGM6_MOOTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC20413.1}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
SCNpilot_expt_1000_bf_scaffold_2744_21
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21089..21580
DNA (492bp) protein (164aa)
malonyl-CoA decarboxylase; K01578 malonyl-CoA decarboxylase [EC:4.1.1.9]
Malonyl-CoA decarboxylase n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVL6_9PROT
Malonyl-CoA decarboxylase {ECO:0000313|EMBL:EGY02692.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_expt_1000_bf_scaffold_2744_22
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21611..22039
DNA (429bp) protein (143aa)
Fatty acid CoA ligase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P7X5_AZOS1
fatty acid CoA ligase
Fatty acid CoA ligase {ECO:0000313|EMBL:BAI76754.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Displaying 22 items

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