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SCNpilot_expt_1000_bf_scaffold_1028

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1028_1
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..986
DNA (984bp) protein (328aa)
aldehyde dehydrogenase (EC:1.2.1.-); K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8]
UPI0003CEB26C related cluster n=1 Tax=unknown RepID=UPI0003CEB26C
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:ESX84587.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
SCNpilot_expt_1000_bf_scaffold_1028_2
unknown

Not on your lists

1782..2021
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1028_3
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2058..2909
DNA (852bp) protein (284aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C7N4_STRBB
binding-protein-dependent transport system inner membrane protein; K15554 sulfonate transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADI12582.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
SCNpilot_expt_1000_bf_scaffold_1028_4
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2911..3651
DNA (741bp) protein (247aa)
ABC transporter related protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C7N3_STRBB
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADI12581.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
SCNpilot_expt_1000_bf_scaffold_1028_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3674..4990
DNA (1317bp) protein (439aa)
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A759_9PROT rbh
FMNH2-dependent monooxygenase {ECO:0000313|EMBL:KJC61031.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
dibenzothiophene desulfurization enzyme A rbh
SCNpilot_expt_1000_bf_scaffold_1028_6
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5003..5512
DNA (510bp) protein (170aa)
FMN reductase n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JT97_9NOCA
FMN reductase {ECO:0000313|EMBL:EHK82774.1}; TaxID=1114960 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans AK37.;"
putative FMN reductase
SCNpilot_expt_1000_bf_scaffold_1028_7
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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5509..6663
DNA (1155bp) protein (385aa)
Flavin reductase domain protein FMN-binding n=1 Tax=Frankia sp. EUN1f RepID=D3CSA6_9ACTO
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:EFC86528.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
flavin reductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1028_8

Not on your lists

comp(6810..8063)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003774E5F
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48906.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
acyl-CoA dehydrogenase, type 2, C-terminal domain protein
SCNpilot_expt_1000_bf_scaffold_1028_9
Gordonia aichiensis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8211..10424)
DNA (2214bp) protein (738aa)
cytochrome P450 n=1 Tax=Patulibacter americanus RepID=UPI0003B460F8 rbh
Putative oxidoreductase {ECO:0000313|EMBL:GAC51015.1}; TaxID=1220583 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia aichiensis NBRC 108223.;"
ferredoxin rbh
SCNpilot_expt_1000_bf_scaffold_1028_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10590..11414)
DNA (825bp) protein (275aa)
DNA-binding protein with HTH domain n=1 Tax=Caulobacter sp. AP07 RepID=J2PSV8_9CAUL
DNA-binding protein with HTH domain {ECO:0000313|EMBL:EJL30792.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1028_11
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11616..13202)
DNA (1587bp) protein (529aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Nocardiopsis salina RepID=UPI00034D4276
Uncharacterized protein {ECO:0000313|EMBL:KHK98819.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
ATPase component of various ABC-type transport systems with duplicated ATPase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1028_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13206..14096)
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8E3_CONWI
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADB49013.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_1028_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(14093..15118)
DNA (1026bp) protein (342aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8E2_CONWI
binding-protein-dependent transporters inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADB49012.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_1028_14
Kocuria rhizophila, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15159..16691)
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Nocardiopsis gilva RepID=UPI00034D5D65
putative ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAG30313.1}; TaxID=378753 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 /; DC2201).;"
SCNpilot_expt_1000_bf_scaffold_1028_15
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17193..17399
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DD77BB
Aminoacyl carrier protein {ECO:0000313|EMBL:CDX22496.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_1028_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17419..18609
DNA (1191bp) protein (397aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003742A32 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CDX22495.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_1028_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18611..19534
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DA48E0 rbh
Amino acid--(Acyl-carrier-protein) ligase {ECO:0000313|EMBL:CDX22494.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
seryl-tRNA synthetase, SerRS-like protein
SCNpilot_expt_1000_bf_scaffold_1028_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19536..20531
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E2573E rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX22492.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1028_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20675..23176
DNA (2502bp) protein (834aa)
mannosidase; K01192 beta-mannosidase [EC:3.2.1.25]
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037311FF rbh
Mannosidase {ECO:0000313|EMBL:CDX22490.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_1028_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23173..24960
DNA (1788bp) protein (596aa)
Putative hydrolase of the alpha/beta superfamily n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7C7_9RHIZ rbh
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EYR77465.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydrolase of the alpha/beta superfamily
SCNpilot_expt_1000_bf_scaffold_1028_21
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24992..25807)
DNA (816bp) protein (272aa)
Porin opacity type n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJE2_9RHIZ
Porin opacity type {ECO:0000313|EMBL:CDX42707.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
opacity protein rbh
SCNpilot_expt_1000_bf_scaffold_1028_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26189..27448
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6L9V5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EZQ13667.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1028_23
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27458..28792
DNA (1335bp) protein (445aa)
glycosyl transferase family 1 n=1 Tax=Desulfovibrio longus RepID=UPI0003B621F1
Uncharacterized protein {ECO:0000313|EMBL:EZQ13668.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_1028_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29151..30518
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361D76B
Heparinase {ECO:0000313|EMBL:EXL09450.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
Displaying 24 items

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