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SCNpilot_expt_1000_bf_scaffold_1147

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1147_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..128)
DNA (126bp) protein (42aa)
UPI0003CF940D related cluster n=1 Tax=unknown RepID=UPI0003CF940D
Aspartate aminotransferase {ECO:0000313|EMBL:ESW84048.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
class I and II aminotransferase
SCNpilot_expt_1000_bf_scaffold_1147_2
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(319..738)
DNA (420bp) protein (140aa)
large conductance mechanosensitive channel protein MscL n=1 Tax=Rhizobium loti RepID=UPI000375C263
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_1147_3
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

950..4441
DNA (3492bp) protein (1164aa)
UPI0003CFFB37 related cluster n=1 Tax=unknown RepID=UPI0003CFFB37 rbh
Histidine kinase {ECO:0000313|EMBL:ESZ21802.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
two-component sensor histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1147_4
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4471..5298)
DNA (828bp) protein (276aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z137_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:AHF77418.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1147_5
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(5319..5981)
DNA (663bp) protein (221aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC52_SPISS
polar amino acid ABC transporter inner membrane protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADK79932.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_expt_1000_bf_scaffold_1147_6
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(5984..6655)
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC51_SPISS
polar amino acid ABC transporter inner membrane protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADK79931.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_expt_1000_bf_scaffold_1147_7
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6664..7395)
DNA (732bp) protein (244aa)
ABC transporter n=1 Tax=Streptomyces sp. Amel2xE9 RepID=UPI00037FDFA0
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KHA76553.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
Glutamate uptake system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1147_8
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(7548..8459)
DNA (912bp) protein (304aa)
Extracellular solute-binding protein family 3 n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC49_SPISS
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADK79929.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_expt_1000_bf_scaffold_1147_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8663..9562
DNA (900bp) protein (300aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Nitratireductor indicus C115 RepID=K2PAK6_9RHIZ
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EKF44161.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
dihydrodipicolinate synthase
SCNpilot_expt_1000_bf_scaffold_1147_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9653..10843
DNA (1191bp) protein (397aa)
Putative aspartate transaminase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQH6_TISMK
aspC; putative aspartate transaminase
Putative aspartate transaminase {ECO:0000313|EMBL:AFK55014.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1147_11
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10849..12546
DNA (1698bp) protein (566aa)
dihydroxyacetone kinase; K00863 dihydroxyacetone kinase [EC:2.7.1.29] rbh
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F030F2 rbh
Dihydroxyacetone kinase {ECO:0000313|EMBL:KJF72871.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_1147_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12557..13216)
DNA (660bp) protein (220aa)
Glycerol metabolism activator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEB5_9RHIZ rbh
Glycerol metabolism activator {ECO:0000313|EMBL:CCV14706.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
two component LuxR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1147_13
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13335..13769)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y8S0_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH90931.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_1147_14
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13926..14276
DNA (351bp) protein (117aa)
Dihydroorotate dehydrogenase n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GJT3_9RHIZ
Dihydroorotate dehydrogenase {ECO:0000313|EMBL:ESY04105.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1147_15
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14273..15346
DNA (1074bp) protein (358aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] rbh
Dihydroorotate dehydrogenase (quinone) {ECO:0000255|HAMAP-Rule:MF_00225}; EC=1.3.5.2 {ECO:0000255|HAMAP-Rule:MF_00225};; DHOdehase {ECO:0000255|HAMAP-Rule:MF_00225}; Short=DHOD {ECO:0000255|HAMAP-Rule:MF_00225};; Short=DHODase {ECO:0000255|HAMAP-Rule:MF_00225};; Dihydroorotate oxidase {ECO:0000255|HAMAP-Rule:MF_00225}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=PYRD_RHILO rbh
SCNpilot_expt_1000_bf_scaffold_1147_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15339..16679)
DNA (1341bp) protein (447aa)
UPI0003CF0A28 related cluster n=1 Tax=unknown RepID=UPI0003CF0A28 rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:ESY74225.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
MATE efflux family protein rbh
SCNpilot_expt_1000_bf_scaffold_1147_17
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16786..17688
DNA (903bp) protein (301aa)
Deacetylase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFT4_9RHIZ rbh
Deacetylase {ECO:0000313|EMBL:EHH09395.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
histone deacetylase rbh
SCNpilot_expt_1000_bf_scaffold_1147_18
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17704..17967)
DNA (264bp) protein (88aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHX7_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESW84040.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1147_19
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18061..18897)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361695F
Alpha (1-4)-galactosyltransferase {ECO:0000313|EMBL:CDX17435.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
lgt5; galactosyltransferase Lgt5
SCNpilot_expt_1000_bf_scaffold_1147_20
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18894..19439)
DNA (546bp) protein (182aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX33950.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Displaying 20 items

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