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SCNpilot_expt_1000_bf_scaffold_1588

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1588_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..740)
DNA (738bp) protein (246aa)
UPI0003CDE579 related cluster n=1 Tax=unknown RepID=UPI0003CDE579 rbh
Protein MoaE {ECO:0000313|EMBL:CDX51453.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_1588_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(905..1492)
DNA (588bp) protein (196aa)
Polyisoprenoid-binding protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7HB66_9RHIZ rbh
YceI family protein {ECO:0000313|EMBL:CDX35824.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
YceI family protein rbh
SCNpilot_expt_1000_bf_scaffold_1588_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1548..2582)
DNA (1035bp) protein (345aa)
UPI0003CF6697 related cluster n=2 Tax=unknown RepID=UPI0003CF6697 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX51448.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1588_4
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2664..4166
DNA (1503bp) protein (501aa)
aldehyde dehydrogenase (EC:1.2.1.3) rbh
UPI0003CE9D29 related cluster n=2 Tax=unknown RepID=UPI0003CE9D29 rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESX87119.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
SCNpilot_expt_1000_bf_scaffold_1588_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4171..5247
DNA (1077bp) protein (359aa)
Alcohol dehydrogenase (Acceptor) {ECO:0000313|EMBL:CDX35830.1}; EC=1.1.99.- {ECO:0000313|EMBL:CDX35830.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CF38E8 related cluster n=1 Tax=unknown RepID=UPI0003CF38E8
glucose-methanol-choline oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1588_6
unknown

Not on your lists

comp(5115..5564)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1588_7
unknown

Not on your lists

6255..6956
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1588_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6881..8338)
DNA (1458bp) protein (486aa)
h16_A3075; dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2]
Dihydropyrimidinase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZYW8_9PROT rbh
Dihydropyrimidinase {ECO:0000313|EMBL:EHM01686.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_expt_1000_bf_scaffold_1588_9
Gluconobacter thailandicus, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8400..9752)
DNA (1353bp) protein (451aa)
hydroxydechloroatrazine ethylaminohydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI00038185E6 rbh
Amidohydrolase {ECO:0000313|EMBL:GAC88135.1}; TaxID=1291534 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter thailandicus NBRC 3255.;"
amidohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_1588_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9962..10897)
DNA (936bp) protein (312aa)
UPI0003CE5E4F related cluster n=1 Tax=unknown RepID=UPI0003CE5E4F
Sugar ABC transporter {ECO:0000313|EMBL:ESW94139.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1588_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10900..11946)
DNA (1047bp) protein (349aa)
UPI0003CE49B6 related cluster n=1 Tax=unknown RepID=UPI0003CE49B6
Sugar ABC transporter {ECO:0000313|EMBL:ESW94140.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
sugar ABC transporter; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1588_12
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11949..13550)
DNA (1602bp) protein (534aa)
sugar ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
UPI0003CF3467 related cluster n=1 Tax=unknown RepID=UPI0003CF3467
ABC transporter {ECO:0000313|EMBL:ESW94141.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_1588_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13566..14681)
DNA (1116bp) protein (372aa)
UPI0003CF8321 related cluster n=1 Tax=unknown RepID=UPI0003CF8321
Membrane protein {ECO:0000313|EMBL:ESW94142.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
basic membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_1588_14
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15465..15962)
DNA (498bp) protein (166aa)
Putative xanthine dehydrogenase subunit E {ECO:0000313|EMBL:CDX29529.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CDX29529.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
xdhA; xanthine dehydrogenase; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
UPI0003CE7AEC related cluster n=1 Tax=unknown RepID=UPI0003CE7AEC
SCNpilot_expt_1000_bf_scaffold_1588_15
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15959..19099)
DNA (3141bp) protein (1047aa)
UPI0003CE077F related cluster n=1 Tax=unknown RepID=UPI0003CE077F rbh
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:CDX29532.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit rbh
SCNpilot_expt_1000_bf_scaffold_1588_16
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19142..19825)
DNA (684bp) protein (228aa)
chlorohydrolase; K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
UPI0003CF83B4 related cluster n=1 Tax=unknown RepID=UPI0003CF83B4
Cytosine deaminase {ECO:0000313|EMBL:ESW94152.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_1588_17
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19777..20487)
DNA (711bp) protein (237aa)
chlorohydrolase; K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
UPI0003CF83B4 related cluster n=1 Tax=unknown RepID=UPI0003CF83B4
Chlorohydrolase {ECO:0000313|EMBL:CDX29538.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_expt_1000_bf_scaffold_1588_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20562..21296)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037F68AB rbh
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:KKB86107.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Asp/Glu racemase
SCNpilot_expt_1000_bf_scaffold_1588_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21334..22092)
DNA (759bp) protein (253aa)
enoyl-CoA hydratase (EC:4.2.1.17)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000370D27D rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIZ47878.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_expt_1000_bf_scaffold_1588_20
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22193..22570)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B7E48
Uncharacterized protein {ECO:0000313|EMBL:KKB86106.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein; K09966 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1588_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22567..24117)
DNA (1551bp) protein (517aa)
amidase; K01426 amidase [EC:3.5.1.4]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C566A rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86105.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1588_22
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24114..25382)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371236E rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86104.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1588_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25658..26605
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A12D0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31090.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1588_24
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26691..27158)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000379CE69
Uncharacterized protein {ECO:0000313|EMBL:KKB86109.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1588_25
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27216..28421)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003666FB9 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86130.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
NAD(FAD)-dependent dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1588_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28548..28745)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037FF88C
Ferredoxin {ECO:0000313|EMBL:KKB86110.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
fdxD; ferredoxin FdxD
SCNpilot_expt_1000_bf_scaffold_1588_27
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28836..30071)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378D4EC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86111.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_1588_28

Not on your lists

comp(30550..30801)
DNA (252bp) protein (84aa)
panE; 2-dehydropantoate 2-reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
Predicted 2-dehydropantoate 2-reductase n=1 Tax=uncultured bacterium MedeBAC46A06 RepID=Q4PJC3_9BACT
Predicted 2-dehydropantoate 2-reductase {ECO:0000313|EMBL:AAY82854.1}; TaxID=332275 species="Bacteria; environmental samples.;" source="uncultured bacterium MedeBAC46A06.;"
Displaying 28 items

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