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SCNpilot_expt_1000_bf_scaffold_1600

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1600_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..463)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037EE235
Fe-S cluster assembly protein SufD {ECO:0000313|EMBL:KFC70076.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1600_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(661..942)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000382170B
17 kDa surface antigen
17 kDa surface antigen {ECO:0000313|EMBL:ADH87398.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_1600_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1221..2465)
DNA (1245bp) protein (415aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
arginine deiminase (EC:3.5.3.6); K01478 arginine deiminase [EC:3.5.3.6] rbh
arginine deiminase n=1 Tax=Hoeflea sp. 108 RepID=UPI00035FA56D rbh
SCNpilot_expt_1000_bf_scaffold_1600_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2483..3340)
DNA (858bp) protein (286aa)
amino acid APC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI000367C0F9 rbh
Transporter, basic amino acid/polyamine antiporter (APA) family {ECO:0000313|EMBL:EJJ28748.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
arginine/ornithine antiporter; K03758 arginine:ornithine antiporter rbh
SCNpilot_expt_1000_bf_scaffold_1600_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3333..3893)
DNA (561bp) protein (187aa)
amino acid APC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI000367C0F9
Transporter, basic amino acid/polyamine antiporter (APA) family {ECO:0000313|EMBL:EJJ28748.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
arginine/ornithine antiporter; K03758 arginine:ornithine antiporter
SCNpilot_expt_1000_bf_scaffold_1600_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4122..5516
DNA (1395bp) protein (465aa)
amino acid APC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00038285D5 rbh
Transporter, basic amino acid/polyamine antiporter (APA) family {ECO:0000313|EMBL:EJJ28749.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
arginine:ornithine antiporter rbh
SCNpilot_expt_1000_bf_scaffold_1600_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5971..7167
DNA (1197bp) protein (399aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1P2_OCHA4 rbh
Peptidase M14 {ECO:0000313|EMBL:KFL29994.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
succinylglutamate desuccinylase/aspartoacylase; K06987 rbh
SCNpilot_expt_1000_bf_scaffold_1600_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7195..8646
DNA (1452bp) protein (484aa)
Putative amidohydrolase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XYV0_RHIRD rbh
Putative amidohydrolase {ECO:0000313|EMBL:EHH04137.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
putative amidohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_1600_9
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8839..9399
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IYC0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ95496.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1600_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9420..10559
DNA (1140bp) protein (380aa)
hemolysin D n=1 Tax=Ochrobactrum anthropi RepID=UPI000289D1B6 rbh
Hemolysin D {ECO:0000313|EMBL:EXL05870.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein rbh
SCNpilot_expt_1000_bf_scaffold_1600_11
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10556..13726
DNA (3171bp) protein (1057aa)
transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000289E125 rbh
RND transporter {ECO:0000313|EMBL:EXL05869.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hydrophobe/amphiphile efflux-1 (HAE1) family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
SCNpilot_expt_1000_bf_scaffold_1600_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13971..14678
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EL76_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDP51373.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1600_13
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14697..15884
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JL15_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EEQ95487.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1600_14
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15918..16628
DNA (711bp) protein (237aa)
MgtC/SapB transporter n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HVL8_9RHIZ
MgtC/SapB transporter {ECO:0000313|EMBL:EMG51707.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
SCNpilot_expt_1000_bf_scaffold_1600_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16683..16874
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0E4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53556.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_1600_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17051..18631
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003717D71 rbh
Aminobenzoyl-glutamate utilization protein B {ECO:0000313|EMBL:CDP52040.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B rbh
SCNpilot_expt_1000_bf_scaffold_1600_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19829..20374
DNA (546bp) protein (182aa)
Serine endoprotease, periplasmic {ECO:0000313|EMBL:CDX52121.1}; EC=3.4.21.- {ECO:0000313|EMBL:CDX52121.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003D02A09 related cluster n=1 Tax=unknown RepID=UPI0003D02A09
protease Do
SCNpilot_expt_1000_bf_scaffold_1600_18
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20519..20785
DNA (267bp) protein (89aa)
UPI0003CF05B7 related cluster n=1 Tax=unknown RepID=UPI0003CF05B7
Serine peptidase {ECO:0000313|EMBL:ESW83157.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
protease Do
SCNpilot_expt_1000_bf_scaffold_1600_19
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21209..22189
DNA (981bp) protein (327aa)
Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas putida CSV86 RepID=L1LSA3_PSEPU
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:EKX81705.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
AraC family transcriptional regulator; K04033 AraC family transcriptional regulator, ethanolamine operon transcriptional activator
SCNpilot_expt_1000_bf_scaffold_1600_20
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22518..23555
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037E53E9
helix-turn-helix domain-containing protein
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ABR64014.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 20 items

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