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SCNpilot_expt_1000_bf_scaffold_1922

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1922_1
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..387)
DNA (387bp) protein (129aa)
4-hydroxy-2-oxovalerate aldolase (EC:4.1.3.39)
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabact
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Octadecabacter arcticus 238 RepID=M9RIU8_9RHOB
SCNpilot_expt_1000_bf_scaffold_1922_2
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(384..1319)
DNA (936bp) protein (312aa)
acetaldehyde dehydrogenase (EC:1.2.1.10) rbh
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
Acetaldehyde dehydrogenase n=1 Tax=Octadecabacter arcticus 238 RepID=M9RRS7_9RHOB rbh
SCNpilot_expt_1000_bf_scaffold_1922_3
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1404..2198)
DNA (795bp) protein (265aa)
GntR family transcriptional regulator n=1 Tax=Octadecabacter arcticus 238 RepID=M9RQ19_9RHOB
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AGI72491.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
SCNpilot_expt_1000_bf_scaffold_1922_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(2388..3545)
DNA (1158bp) protein (386aa)
Ribose ABC transport system permease protein RbsC (TC 3.A.1.2.1) n=1 Tax=Patulibacter medicamentivorans RepID=H0E0P3_9ACTN
inner-membrane translocator; K10440 ribose transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADB52304.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_1922_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(3542..5125)
DNA (1584bp) protein (528aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3E0_CONWI
ABC transporter related protein {ECO:0000313|EMBL:ADB52305.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_1922_6
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5122..6726)
DNA (1605bp) protein (535aa)
glucose-methanol-choline oxidoreductase; K00119 [EC:1.1.99.-] rbh
choline dehydrogenase n=1 Tax=Sphingomonas wittichii RepID=UPI00035C5782 rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ABQ71147.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1922_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6843..8456)
DNA (1614bp) protein (538aa)
glucose-methanol-choline oxidoreductase; K00119 [EC:1.1.99.-]
choline dehydrogenase n=1 Tax=Sphingomonas wittichii RepID=UPI00035C5782
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ABQ71147.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1922_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8696..10336)
DNA (1641bp) protein (547aa)
crotonobetaine/carnitine-CoA ligase (EC:6.3.2.-); K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-] rbh
Blr3433 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89PP7_BRADU rbh
Crotonobetainyl-CoA:carnitine CoA-transferase {ECO:0000313|EMBL:KJC56204.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_expt_1000_bf_scaffold_1922_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10345..11853)
DNA (1509bp) protein (503aa)
aldehyde dehydrogenase (EC:1.2.1.3) rbh
Aldehyde dehydrogenase (NAD(+)) {ECO:0000313|EMBL:ABQ71143.1}; EC=1.2.1.3 {ECO:0000313|EMBL:ABQ71143.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Aldehyde dehydrogenase (NAD(+)) n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFS7_SPHWW rbh
SCNpilot_expt_1000_bf_scaffold_1922_10
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(11982..13178)
DNA (1197bp) protein (399aa)
Amidohydrolase {ECO:0000313|EMBL:EHN12784.1}; EC=3.5.1.14 {ECO:0000313|EMBL:EHN12784.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
amidohydrolase (EC:3.5.1.14); K01436 amidohydrolase [EC:3.5.1.-] rbh
Amidohydrolase n=1 Tax=Patulibacter medicamentivorans RepID=H0E0Q0_9ACTN rbh
SCNpilot_expt_1000_bf_scaffold_1922_11
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13224..14735)
DNA (1512bp) protein (504aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00146 phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
Probable aldehyde dehydrogenase n=1 Tax=Sagittula stellata E-37 RepID=A3K7U6_9RHOB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGF69422.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_1922_12
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14939..15022)
DNA (84bp) protein (28aa)
Ferric aerobactin receptor n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BQM9_9BACT
Ferric aerobactin receptor {ECO:0000313|EMBL:ERM82865.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
TonB-dependent receptor plug
Displaying 12 items

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