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SCNpilot_expt_1000_bf_scaffold_1958

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1958_1
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1546)
DNA (1545bp) protein (515aa)
UPI0003CED8F0 related cluster n=1 Tax=unknown RepID=UPI0003CED8F0 rbh
Membrane protein {ECO:0000313|EMBL:ESY79663.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
surface antigen (D15); K07278 outer membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_1958_2
unknown

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comp(1882..3789)
DNA (1908bp) protein (636aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1958_3
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4121..7390
DNA (3270bp) protein (1090aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEZ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14885.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
large extracellular alpha-helical protein
SCNpilot_expt_1000_bf_scaffold_1958_4
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7539..9605
DNA (2067bp) protein (689aa)
penicillin binding protein; K05367 penicillin-binding protein 1C [EC:2.4.1.-] rbh
penicillin-binding protein 1C n=1 Tax=Rhizobium loti RepID=UPI00037AD353 rbh
Penicillin-binding protein 1C {ECO:0000313|EMBL:AID31071.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_1958_5
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9858..10886
DNA (1029bp) protein (343aa)
Sulfate ABC transporter, periplasmic sulfate-binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TE21_MESCW rbh
Sulfate transporter subunit periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CDX29817.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
sulfate ABC transporter substrate-binding protein; K02048 sulfate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1958_6
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10906..11757
DNA (852bp) protein (284aa)
UPI0003CE5433 related cluster n=1 Tax=unknown RepID=UPI0003CE5433 rbh
Sulfate/thiosulfate transporter subunit {ECO:0000313|EMBL:ESX60995.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
sulfate ABC transporter permease; K02046 sulfate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1958_7
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11750..12634
DNA (885bp) protein (295aa)
UPI0003D021AE related cluster n=1 Tax=unknown RepID=UPI0003D021AE rbh
Sulfate/thiosulfate transporter permease subunit {ECO:0000313|EMBL:ESZ23616.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
sulfate ABC transporter, permease protein CysW rbh
SCNpilot_expt_1000_bf_scaffold_1958_8
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12739..13776
DNA (1038bp) protein (346aa)
sulfate ABC transporter ATP-binding protein; K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25] rbh
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
UPI0003D03883 related cluster n=1 Tax=unknown RepID=UPI0003D03883 rbh
SCNpilot_expt_1000_bf_scaffold_1958_9
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13961..14947
DNA (987bp) protein (329aa)
Sulfate-binding protein of ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98K20_RHILO rbh
sulfate-binding protein of ABC transporter; K02048 sulfate transport system substrate-binding protein rbh
Sulfate-binding protein of ABC transporter {ECO:0000313|EMBL:BAB48994.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1958_10
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15340..15789
DNA (450bp) protein (150aa)
UPI0003CEEC71 related cluster n=1 Tax=unknown RepID=UPI0003CEEC71
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:ESY77034.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
Rrf2 family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1958_11
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15830..16369)
DNA (540bp) protein (180aa)
carbohydrate kinase, thermoresistant glucokinase family (EC:2.7.1.12); K00851 gluconokinase [EC:2.7.1.12]
UPI0003CEBBAE related cluster n=1 Tax=unknown RepID=UPI0003CEBBAE
Gluconokinase {ECO:0000313|EMBL:ESY63662.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_1958_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16376..17362)
DNA (987bp) protein (329aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KM00_MESAW rbh
Putative sugar ABC transporter, permease protein ribose ABC transporter rbsC-like {ECO:0000313|EMBL:CDX33205.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters rbh
SCNpilot_expt_1000_bf_scaffold_1958_13
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17359..18339)
DNA (981bp) protein (327aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TE10_MESCW rbh
inner-membrane translocator rbh
Inner-membrane translocator {ECO:0000313|EMBL:ADV12182.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1958_14
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18336..19868)
DNA (1533bp) protein (511aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
ABC transporter related protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDL2_MESOW rbh
SCNpilot_expt_1000_bf_scaffold_1958_15
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19937..21064)
DNA (1128bp) protein (376aa)
Binding protein component of ABC ribose transporter n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TE08_MESCW rbh
ribose ABC transporter binding protein rbh
Binding protein component of ABC ribose transporter {ECO:0000313|EMBL:ADV12180.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1958_16
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21337..21732)
DNA (396bp) protein (132aa)
UPI0003CF3F1E related cluster n=1 Tax=unknown RepID=UPI0003CF3F1E
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
Transcriptional regulator {ECO:0000313|EMBL:ESW88844.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_1958_17
unknown

Not on your lists

21797..22474
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1958_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22471..23700)
DNA (1230bp) protein (410aa)
Major facilitator superfamily protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YBF5_9RHIZ rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:CDX13452.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
major facilitator superfamily protein rbh
SCNpilot_expt_1000_bf_scaffold_1958_19
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23915..24583)
DNA (669bp) protein (223aa)
Putative transcriptional regulator n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EUJ7_9RHIZ rbh
Putative transcriptional regulator {ECO:0000313|EMBL:CCV07892.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1958_20
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24775..25155)
DNA (381bp) protein (127aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TE03_MESCW
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDX13462.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_1958_21
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25110..25670)
DNA (561bp) protein (187aa)
UPI0003D061BA related cluster n=1 Tax=unknown RepID=UPI0003D061BA
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDX29871.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
nucleoside-diphosphate-sugar epimerase
SCNpilot_expt_1000_bf_scaffold_1958_22
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26188..26712
DNA (525bp) protein (175aa)
3-hydroxyisobutyrate dehydrogenase; K00100 [EC:1.1.1.-]
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FD36_9RHIZ
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:ESX67765.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_1958_23
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26738..27514)
DNA (777bp) protein (259aa)
UPI0003CDEA05 related cluster n=1 Tax=unknown RepID=UPI0003CDEA05 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ01780.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1958_24
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27690..28679)
DNA (990bp) protein (330aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium loti RepID=UPI000380ADE7 rbh
ABC-type sugar transport system, periplasmic component rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:AGB45683.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_1958_25
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29126..29887
DNA (762bp) protein (254aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI00037BD9C9 rbh
ABC transporter {ECO:0000313|EMBL:CDX13471.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_1958_26
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29941..30939
DNA (999bp) protein (333aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KKT3_MESAW rbh
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters rbh
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AGB45681.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_1958_27
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31036..31773
DNA (738bp) protein (246aa)
short-chain dehydrogenase/reductase SDR; K00046 gluconate 5-dehydrogenase [EC:1.1.1.69] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDZ7_MESCW rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV12169.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1958_28
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31994..32821
DNA (828bp) protein (276aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EV82_9RHIZ rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCV07900.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
AraC type helix-turn-helix-domain containing protein rbh
Displaying 28 items

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