ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3014

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3014_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

258..824
DNA (567bp) protein (189aa)
6-phospho 3-hexuloisomerase; K08094 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
UPI0003CF4202 related cluster n=1 Tax=unknown RepID=UPI0003CF4202
Iron-sulfur cluster assembly protein HesB {ECO:0000313|EMBL:ESW92723.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_3014_2
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

829..1572
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003735ED0 rbh
uncharacterized protein, putative amidase rbh
Uncharacterized protein, putative amidase {ECO:0000313|EMBL:AGB46807.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3014_3
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1599..2516)
DNA (918bp) protein (306aa)
UPI0003CF85CB related cluster n=1 Tax=unknown RepID=UPI0003CF85CB rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:ESW92725.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3014_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2527..3642)
DNA (1116bp) protein (372aa)
UPI0003D02CCB related cluster n=1 Tax=unknown RepID=UPI0003D02CCB rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:ESZ20873.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
permease component of ABC-type sugar transporter rbh
SCNpilot_expt_1000_bf_scaffold_3014_5
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3788..5452)
DNA (1665bp) protein (555aa)
UPI0003D02520 related cluster n=1 Tax=unknown RepID=UPI0003D02520 rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY96812.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3014_6
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5734..6792
DNA (1059bp) protein (353aa)
ABC transporter, ATP-binding protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982U5_RHILO rbh
ABC transporter ATP-binding protein; K02023 multiple sugar transport system ATP-binding protein rbh
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:ETA72658.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
SCNpilot_expt_1000_bf_scaffold_3014_7
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6843..7295
DNA (453bp) protein (151aa)
UPI0003D05BAE related cluster n=1 Tax=unknown RepID=UPI0003D05BAE
Fucose binding protein {ECO:0000313|EMBL:ESZ20870.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
fucose dissimilation pathway protein FucU
SCNpilot_expt_1000_bf_scaffold_3014_8
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7317..8237
DNA (921bp) protein (307aa)
Ribokinase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFJ3_9RHIZ rbh
Ribokinase {ECO:0000313|EMBL:CDX28763.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ribokinase rbh
SCNpilot_expt_1000_bf_scaffold_3014_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8303..8506)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCI2_MESOW
Uncharacterized protein {ECO:0000313|EMBL:CDX39425.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3014_10
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9073..9366)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000307922D
Uncharacterized protein {ECO:0000313|EMBL:CDX20440.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3014_11
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9497..9742)
DNA (246bp) protein (82aa)
Uncharacterized protein n=3 Tax=Mesorhizobium RepID=V7F9D6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX17977.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3014_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9693..9947)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Ochrobactrum anthropi RepID=UPI0002896F74
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDX36377.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_3014_13
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..10934)
DNA (771bp) protein (257aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
UPI0003CF0C5B related cluster n=1 Tax=unknown RepID=UPI0003CF0C5B rbh
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:ESY31817.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
SCNpilot_expt_1000_bf_scaffold_3014_14
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10942..11937)
DNA (996bp) protein (332aa)
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI0003716CA3 rbh
Inner-membrane translocator {ECO:0000313|EMBL:CDX28748.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3014_15
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12136..12639)
DNA (504bp) protein (168aa)
UPI0003CF9558 related cluster n=1 Tax=unknown RepID=UPI0003CF9558
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY96819.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
ABC transporter binding protein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3014_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13217..13981)
DNA (765bp) protein (255aa)
UPI0003CE0DDD related cluster n=1 Tax=unknown RepID=UPI0003CE0DDD rbh
ABC sugar transport ATP binding protein {ECO:0000313|EMBL:CDX11759.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ABC-type sugar transport system, ATPase component rbh
SCNpilot_expt_1000_bf_scaffold_3014_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13978..15147)
DNA (1170bp) protein (390aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FA12_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:CCV13295.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ROK family protein rbh
SCNpilot_expt_1000_bf_scaffold_3014_18
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15347..15838)
DNA (492bp) protein (164aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KS41_MESAW
metalloendopeptidase-like membrane protein
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:AGB46794.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3014_19
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15835..16503)
DNA (669bp) protein (223aa)
Peptidase M23 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TGB7_MESCW
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADV13508.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3014_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16735..17202)
DNA (468bp) protein (156aa)
Putative peroxiredoxin bcp {ECO:0000313|EMBL:CDX17565.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CDX17565.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
bacterioferritin; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
alkyl hydroperoxide reductase n=1 Tax=Rhizobium loti RepID=UPI0003763B75
SCNpilot_expt_1000_bf_scaffold_3014_21
unknown

Not on your lists

comp(17204..17956)
DNA (753bp) protein (251aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3014_22
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19756..20193
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FA20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV13300.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
Displaying 22 items

View Taxonomy