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SCNpilot_expt_1000_bf_scaffold_3029

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3029_1
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

547..906
DNA (360bp) protein (120aa)
Putrescine/spermidine ABC transporter permease n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7EV67_9RHIZ
Putrescine/spermidine ABC transporter permease {ECO:0000313|EMBL:ESZ34571.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
ABC transporter polyamine transport protein, permease; K11075 putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3029_2
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

903..1721
DNA (819bp) protein (273aa)
Putrescine transporter subunit: membrane component of ABC superfamily n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU85_9RHIZ rbh
Putrescine transporter subunit: membrane component of ABC superfamily {ECO:0000313|EMBL:CCV08569.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
binding-protein-dependent transport system inner membrane protein; K11074 putrescine transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3029_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1975..3861)
DNA (1887bp) protein (629aa)
UPI0003D06357 related cluster n=1 Tax=unknown RepID=UPI0003D06357 rbh
AsmA family protein {ECO:0000313|EMBL:CDX16273.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
AsmA family protein; K07289 AsmA protein rbh
SCNpilot_expt_1000_bf_scaffold_3029_4
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4046..6004
DNA (1959bp) protein (653aa)
Acetoacetyl-coenzyme A synthetase {ECO:0000313|EMBL:CDX33352.1}; EC=6.2.1.16 {ECO:0000313|EMBL:CDX33352.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
acetoacetyl-CoA synthetase (EC:6.2.1.1); K01907 acetoacetyl-CoA synthetase [EC:6.2.1.16] rbh
Acetoacetyl-CoA synthetase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YK94_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3029_5
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6337..9765)
DNA (3429bp) protein (1143aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
PAS sensor protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TM72_MESCW rbh
PAS sensor protein rbh
SCNpilot_expt_1000_bf_scaffold_3029_6
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10209..10667
DNA (459bp) protein (153aa)
Phasin n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7XZP7_MESOW
phasin
Phasin {ECO:0000313|EMBL:ESY66264.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_3029_7
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11365..11610
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KLS4_MESAW
Protein of unknown function (DUF768)
Uncharacterized protein {ECO:0000313|EMBL:ESY98925.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_3029_8
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11790..12911)
DNA (1122bp) protein (374aa)
UPI0003CF9C83 related cluster n=1 Tax=unknown RepID=UPI0003CF9C83 rbh
Aminopeptidase {ECO:0000313|EMBL:ESY64635.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
D-aminopeptidase rbh
SCNpilot_expt_1000_bf_scaffold_3029_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12922..13224)
DNA (303bp) protein (101aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
exodeoxyribonuclease VII, large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6S4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3029_10
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14571..15527)
DNA (957bp) protein (319aa)
LysR family transcriptional regulator n=2 Tax=Mesorhizobium RepID=V7F0T1_9RHIZ rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDX43592.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_3029_11
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15700..15990
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00030ED80E
Uncharacterized protein {ECO:0000313|EMBL:AID28308.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3029_12
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16159..17214)
DNA (1056bp) protein (352aa)
UPI0003CF006C related cluster n=1 Tax=unknown RepID=UPI0003CF006C rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY24798.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3029_13
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17378..17851)
DNA (474bp) protein (158aa)
Glutamate--cysteine ligase B, chloroplastic {ECO:0000313|EMBL:CDX43601.1}; EC=6.3.2.2 {ECO:0000313|EMBL:CDX43601.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
glutamate/cysteine ligase (EC:6.3.2.2); K01919 glutamate--cysteine ligase [EC:6.3.2.2]
UPI0003CF92AA related cluster n=1 Tax=unknown RepID=UPI0003CF92AA
SCNpilot_expt_1000_bf_scaffold_3029_14
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17800..18723)
DNA (924bp) protein (308aa)
gamma-glutamylcysteine synthetase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
glutamate--cysteine ligase n=1 Tax=Rhizobium loti RepID=UPI000374A571
Gamma-glutamylcysteine synthetase {ECO:0000313|EMBL:BAB53101.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_3029_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19040..19774)
DNA (735bp) protein (245aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] rbh
UPI0003CEF5EC related cluster n=1 Tax=unknown RepID=UPI0003CEF5EC rbh
SCNpilot_expt_1000_bf_scaffold_3029_16
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20011..20406
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SM89_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KAJ03649.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
glutathione-dependent formaldehyde-activating GFA
SCNpilot_expt_1000_bf_scaffold_3029_17
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20460..21098)
DNA (639bp) protein (213aa)
UPI0003CEEB59 related cluster n=1 Tax=unknown RepID=UPI0003CEEB59
Uncharacterized protein {ECO:0000313|EMBL:ESW70192.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3029_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21283..21981
DNA (699bp) protein (233aa)
UPI0003CEFE25 related cluster n=1 Tax=unknown RepID=UPI0003CEFE25 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX54398.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
glutamine amidotransferase rbh
SCNpilot_expt_1000_bf_scaffold_3029_19
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22331..22492
DNA (162bp) protein (54aa)
UPI0003CE71A6 related cluster n=1 Tax=unknown RepID=UPI0003CE71A6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY65349.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_3029_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22696..23529)
DNA (834bp) protein (278aa)
metallophosphoesterase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16] rbh
Metallophosphoesterase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNA5_MESCW rbh
Bis(5'nucleosyl)-tetraphosphatase, ApaH {ECO:0000313|EMBL:EHH02360.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_3029_21
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23603..24739)
DNA (1137bp) protein (379aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
UPI0003CE0919 related cluster n=1 Tax=unknown RepID=UPI0003CE0919 rbh
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:AEH87165.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_3029_22
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24751..25560)
DNA (810bp) protein (270aa)
DNA-binding transcriptional dual regulator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6E9_9RHIZ rbh
DNA-binding transcriptional dual regulator {ECO:0000313|EMBL:CCV11851.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex rbh
SCNpilot_expt_1000_bf_scaffold_3029_23
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25771..26766
DNA (996bp) protein (332aa)
UPI0003CF5C56 related cluster n=1 Tax=unknown RepID=UPI0003CF5C56
Uncharacterized protein {ECO:0000313|EMBL:ESY75747.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3029_24
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26712..27089
DNA (378bp) protein (126aa)
Mlr6914 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q987U1_RHILO
hypothetical protein
Putative membrane-anchored protein {ECO:0000313|EMBL:ETA71499.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
SCNpilot_expt_1000_bf_scaffold_3029_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27228..28694
DNA (1467bp) protein (489aa)
Glycolate oxidase, subunit GlcD {ECO:0000313|EMBL:CCV11854.1}; EC=1.1.3.15 {ECO:0000313|EMBL:CCV11854.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
D-lactate dehydrogenase (EC:1.1.2.4); K00104 glycolate oxidase [EC:1.1.3.15] rbh
Glycolate oxidase, subunit GlcD n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIH9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3029_26
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29520..30209
DNA (690bp) protein (230aa)
UPI0003CFF8D8 related cluster n=1 Tax=unknown RepID=UPI0003CFF8D8
Glycolate oxidase FAD binding subunit {ECO:0000313|EMBL:CDX32784.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
glycolate oxidase subunits GlcE; K11472 glycolate oxidase FAD binding subunit
Displaying 26 items

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