ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3405

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3405_1
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..511
DNA (510bp) protein (170aa)
Uncharacterized transporter HI_0895 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ELG9_9RHIZ
Uncharacterized transporter HI_0895 {ECO:0000313|EMBL:CCV05015.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
cation/multidrug efflux pump
SCNpilot_expt_1000_bf_scaffold_3405_2
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(599..1060)
DNA (462bp) protein (154aa)
UPI0003CFF827 related cluster n=1 Tax=unknown RepID=UPI0003CFF827
Uncharacterized protein {ECO:0000313|EMBL:ESZ26757.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3405_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1721..1888
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8F5_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV10611.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3405_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1929..2597)
DNA (669bp) protein (223aa)
UPI0003CFE4D2 related cluster n=1 Tax=unknown RepID=UPI0003CFE4D2 rbh
Transcriptional regulator {ECO:0000313|EMBL:ESZ21940.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_3405_5
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2690..3403
DNA (714bp) protein (238aa)
UPI0003CEB59E related cluster n=1 Tax=unknown RepID=UPI0003CEB59E rbh
Transcriptional regulator {ECO:0000313|EMBL:ESY81726.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
winged helix family two component transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_3405_6
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3532..5634
DNA (2103bp) protein (701aa)
Sensor protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJT8_9RHIZ rbh
PAS sensor protein {ECO:0000313|EMBL:EHH11532.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
PAS domain S-box rbh
SCNpilot_expt_1000_bf_scaffold_3405_7
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5831..6241)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003743CB7
Uncharacterized protein {ECO:0000313|EMBL:CDX37372.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3405_8
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6855..7907
DNA (1053bp) protein (351aa)
UPI0003CE0D2F related cluster n=1 Tax=unknown RepID=UPI0003CE0D2F
Rieske (2Fe-2S) iron-sulfur domain-containing protein
Dioxygenase {ECO:0000313|EMBL:ESY70303.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_3405_9
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8047..9465)
DNA (1419bp) protein (473aa)
UPI0003CE803D related cluster n=1 Tax=unknown RepID=UPI0003CE803D rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY90616.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
adenosylmethionine-8-amino-7-oxononanoate aminotransferase rbh
SCNpilot_expt_1000_bf_scaffold_3405_10
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9789..10706
DNA (918bp) protein (306aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0P2_MESOW rbh
binding-protein-dependent transport systems inner membrane component; K11071 spermidine/putrescine transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEH85961.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_3405_11
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10703..11527
DNA (825bp) protein (275aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHU2_MESAW rbh
ABC-type spermidine/putrescine transport system, permease component II rbh
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:AGB43959.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3405_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11520..12638
DNA (1119bp) protein (373aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Spermidine/putrescine ABC transporter ATP-binding subunit n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIR4_MESAW rbh
spermidine/putrescine ABC transporter ATP-binding subunit rbh
SCNpilot_expt_1000_bf_scaffold_3405_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12602..13921)
DNA (1320bp) protein (440aa)
monoamine oxidase A; K00274 monoamine oxidase [EC:1.4.3.4] rbh
Mll3668 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98FQ2_RHILO rbh
Amine oxidase {ECO:0000313|EMBL:CDX34417.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_3405_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13939..14901)
DNA (963bp) protein (321aa)
Spermidine/putrescine-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y744_9RHIZ rbh
Spermidine/putrescine-binding protein {ECO:0000313|EMBL:CDX34420.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
spermidine/putrescine-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3405_15
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15074..15652)
DNA (579bp) protein (193aa)
Predicted protein tyrosine phosphatase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SHQ7_HAHCH
protein tyrosine phosphatase
Uncharacterized protein {ECO:0000313|EMBL:ABC29817.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
SCNpilot_expt_1000_bf_scaffold_3405_16
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15722..16804)
DNA (1083bp) protein (361aa)
UPI0003CDE355 related cluster n=1 Tax=unknown RepID=UPI0003CDE355 rbh
Polyamine ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY70296.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
spermidine/putrescine ABC transporter substrate-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3405_17
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16846..17562)
DNA (717bp) protein (239aa)
Transcriptional regulator n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHF7_MESAW rbh
transcriptional regulator rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:ESY97867.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_3405_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17569..18363)
DNA (795bp) protein (265aa)
Methyltransferase type 11 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4Q3_9RHIZ rbh
Type 11 methyltransferase {ECO:0000313|EMBL:CDX23746.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
type 11 methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_3405_19
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19131..20117
DNA (987bp) protein (329aa)
FAD dependent oxidoreductase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0N4_MESOW
FAD dependent oxidoreductase
Amine oxidase {ECO:0000313|EMBL:ESZ11723.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
SCNpilot_expt_1000_bf_scaffold_3405_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20104..20802
DNA (699bp) protein (233aa)
UPI0003CEA60F related cluster n=1 Tax=unknown RepID=UPI0003CEA60F
Phytoene dehydrogenase {ECO:0000313|EMBL:CDX48939.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
phytoene dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3405_21
unknown

Not on your lists

comp(20756..21256)
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3405_22
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21355..21645
DNA (291bp) protein (97aa)
UPI0003D03571 related cluster n=1 Tax=unknown RepID=UPI0003D03571
Phytoene dehydrogenase {ECO:0000313|EMBL:CDX34628.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
phytoene dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3405_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21648..21959
DNA (312bp) protein (104aa)
glycine cleavage system protein T; K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98FP5_RHILO
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:CDX34631.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_expt_1000_bf_scaffold_3405_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21956..22900
DNA (945bp) protein (315aa)
UPI0003CE3D60 related cluster n=1 Tax=unknown RepID=UPI0003CE3D60
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:CDX48937.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
glycine cleavage system T protein (aminomethyltransferase)
SCNpilot_expt_1000_bf_scaffold_3405_25
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22902..23162
DNA (261bp) protein (87aa)
UPI0003CE4F3F related cluster n=1 Tax=unknown RepID=UPI0003CE4F3F
Uncharacterized protein {ECO:0000313|EMBL:ESY70290.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3405_26
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23209..23886)
DNA (678bp) protein (226aa)
UPI0003CFF968 related cluster n=1 Tax=unknown RepID=UPI0003CFF968
Membrane protein {ECO:0000313|EMBL:EXL09136.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
opacity protein
SCNpilot_expt_1000_bf_scaffold_3405_27
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24237..25295)
DNA (1059bp) protein (353aa)
Membrane dipeptidase (EC:3.4.13.19); K01273 membrane dipeptidase [EC:3.4.13.19] rbh
UPI0003CFBAF1 related cluster n=1 Tax=unknown RepID=UPI0003CFBAF1 rbh
Peptidase {ECO:0000313|EMBL:ESZ21936.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_3405_28
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25462..25761)
DNA (300bp) protein (100aa)
UPI0003CF9D4F related cluster n=1 Tax=unknown RepID=UPI0003CF9D4F
Acetyltransferase {ECO:0000313|EMBL:ESZ21935.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein; K06975
SCNpilot_expt_1000_bf_scaffold_3405_29
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25819..26451)
DNA (633bp) protein (211aa)
UPI0003CE6E3E related cluster n=1 Tax=unknown RepID=UPI0003CE6E3E rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX23416.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase rbh
SCNpilot_expt_1000_bf_scaffold_3405_30
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26458..27390)
DNA (933bp) protein (311aa)
Putative ring-cleaving dioxygenase mhqE {ECO:0000313|EMBL:CCV11145.1}; EC=1.13.11.- {ECO:0000313|EMBL:CCV11145.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Putative ring-cleaving dioxygenase mhqE n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3R6_9RHIZ rbh
aromatic metabolite ABC transporter yodE; K15975 glyoxalase family protein rbh
Displaying items 1-30 of 35 in total

View Taxonomy