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SCNpilot_expt_1000_bf_scaffold_3506

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3506_1
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..742
DNA (741bp) protein (247aa)
Putative signal transduction histidine kinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXB9_LEPCP
Uncharacterized protein {ECO:0000313|EMBL:KDP86714.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
putative signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_3506_2
unknown

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739..975
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3506_3
bacterium YEK0313, Bacteria

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comp(1119..2237)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F754C rbh
Putative diguanylate cyclase YcdT {ECO:0000313|EMBL:CEJ10793.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3506_4
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2660..3517)
DNA (858bp) protein (286aa)
Opacity protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I3M5_9BRAD
Opacity protein {ECO:0000313|EMBL:EJN13988.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
outer-membrane immunogenic protein
SCNpilot_expt_1000_bf_scaffold_3506_5
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3811..4683
DNA (873bp) protein (291aa)
UPI0003CF07D3 related cluster n=1 Tax=unknown RepID=UPI0003CF07D3
ATPase AAA {ECO:0000313|EMBL:ESY64254.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein
SCNpilot_expt_1000_bf_scaffold_3506_6
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4658..5302
DNA (645bp) protein (215aa)
UPI0003CF082E related cluster n=1 Tax=unknown RepID=UPI0003CF082E
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein
ATPase AAA {ECO:0000313|EMBL:ESY80244.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_3506_7
unknown

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5610..6701
DNA (1092bp) protein (364aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3506_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7047..7883
DNA (837bp) protein (279aa)
iron transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI0002881A08 rbh
Iron transporter {ECO:0000313|EMBL:EXL04656.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
iron permease FTR1; K07243 high-affinity iron transporter rbh
SCNpilot_expt_1000_bf_scaffold_3506_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7892..9004
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5Q9_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS16563.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_3506_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9004..10302
DNA (1299bp) protein (433aa)
Dyp-type peroxidase family protein; K15733 dye decolorizing peroxidase [EC:1.11.1.19] rbh
Dyp-type peroxidase family protein n=1 Tax=Ochrobactrum anthropi RepID=UPI00028A0503 rbh
Peroxidase {ECO:0000313|EMBL:EXL04654.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_3506_11
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10333..11154
DNA (822bp) protein (274aa)
Uncharacterized protein n=4 Tax=Ochrobactrum RepID=M5JN76_9RHIZ rbh
Periplasmic lipoprotein involved in iron transport {ECO:0000313|EMBL:ERM03272.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
hypothetical protein; K07224 putative lipoprotein rbh
SCNpilot_expt_1000_bf_scaffold_3506_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11889..14507)
DNA (2619bp) protein (873aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
malate synthase G (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9]
malate synthase n=1 Tax=Rhizobium loti RepID=UPI00037C8EC2
SCNpilot_expt_1000_bf_scaffold_3506_13
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14744..16765)
DNA (2022bp) protein (674aa)
Hydantoinase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE55_9RHIZ rbh
Hydantoinase {ECO:0000313|EMBL:CDX42789.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hydantoinase rbh
SCNpilot_expt_1000_bf_scaffold_3506_14
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17083..17709)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EYU1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV10282.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3506_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17801..18163)
DNA (363bp) protein (121aa)
UPI0003CED128 related cluster n=1 Tax=unknown RepID=UPI0003CED128
Uncharacterized protein {ECO:0000313|EMBL:CDX37638.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3506_16
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18350..18526
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KD41_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB43232.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3506_17
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

18715..19467
DNA (753bp) protein (251aa)
Acetoacetyl-CoA reductase n=2 Tax=Streptomyces RepID=H0BL21_9ACTO id=1246561 bin=RBG9 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG9 organism_group=Chloroflexi
short-chain dehydrogenase/reductase sdr
Tax=RBG_16_Chloroflexi_48_8_curated
SCNpilot_expt_1000_bf_scaffold_3506_18
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19943..20563)
DNA (621bp) protein (207aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phylloba
phosphoglyceromutase (EC:5.4.2.1) rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=GPMA_RHILO rbh
SCNpilot_expt_1000_bf_scaffold_3506_19
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20928..21344
DNA (417bp) protein (139aa)
Predicted signal transduction protein containing a membrane domain protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y6P5_KETVW
signal transduction protein containing a membrane domain protein
Predicted signal transduction protein containing a membrane domain protein {ECO:0000313|EMBL:AEM42165.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
Displaying 19 items

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