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SCNpilot_expt_1000_bf_scaffold_3565

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3565_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..697)
DNA (696bp) protein (232aa)
nucleoside hydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003604D69 rbh
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:CDX43771.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inosine/uridine-preferring nucleoside hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_3565_2
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(728..931)
DNA (204bp) protein (68aa)
Inosine/uridine-preferring nucleoside hydrolase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YHK5_MESOW
Inosine/uridine-preferring nucleoside hydrolase
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:AEH90378.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_3565_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(947..1936)
DNA (990bp) protein (330aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI000372F689 rbh
Inner-membrane translocator {ECO:0000313|EMBL:CDX43774.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1924..2964)
DNA (1041bp) protein (347aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A18C1 rbh
Inner-membrane translocator {ECO:0000313|EMBL:CDX54703.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2961..4544)
DNA (1584bp) protein (528aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
ABC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CF8EE rbh
Uncharacterized ABC transporter ATP-binding protein YufO {ECO:0000313|EMBL:CDX28429.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_3565_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4703..5707)
DNA (1005bp) protein (335aa)
Basic membrane lipoprotein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YHK1_MESOW rbh
Basic membrane lipoprotein {ECO:0000313|EMBL:CDX28428.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
basic membrane lipoprotein; K07335 basic membrane protein A and related proteins rbh
SCNpilot_expt_1000_bf_scaffold_3565_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5940..6524
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000372F397 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX28426.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6521..7105
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6Y6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX43789.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7229..7774)
DNA (546bp) protein (182aa)
Enamidase {ECO:0000313|EMBL:CDX28422.1}; EC=3.5.2.18 {ECO:0000313|EMBL:CDX28422.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
amidohydrolase; K15358 enamidase [EC:3.5.2.18]
Enamidase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003817DB0
SCNpilot_expt_1000_bf_scaffold_3565_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8508..9035)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000362286D
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CDX43795.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3565_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9089..9772)
DNA (684bp) protein (228aa)
isochorismatase hydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI000373BCF9 rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:CDX54719.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
isochorismatase hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_3565_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10018..10860
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000375A3AB rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDX43801.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_3565_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10938..11756
DNA (819bp) protein (273aa)
Levodione reductase {ECO:0000313|EMBL:CDX43803.1}; EC=1.1.1.- {ECO:0000313|EMBL:CDX43803.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
short-chain dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BA318 rbh
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_3565_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11913..12911)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F7AA9A rbh
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX43807.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
high-affinity branched-chain amino acid transport system permease; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12908..14467)
DNA (1560bp) protein (520aa)
Putative high-affinity branched-chain amino acid transport system permease protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZLN0_ROSLO rbh
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX28412.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
high-affinity branched-chain amino acid transport system permease; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14467..15225)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D40CA2
Putative high-affinity branched-chain amino acid transport ATP-binding protein {ECO:0000313|EMBL:CDX43816.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
high-affinity branched-chain amino acid transport ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3565_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15230..16411)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030EEEE0 rbh
Putative aliphatic amidase expression-regulating protein {ECO:0000313|EMBL:CDX54735.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aliphatic amidase expression-regulating protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3565_18
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16776..17663
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0003129D1A
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:EST53409.1}; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_3565_19
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17721..18377
DNA (657bp) protein (219aa)
UPI0003CF03B5 related cluster n=1 Tax=unknown RepID=UPI0003CF03B5
Amino acid ABC transporter permease {ECO:0000313|EMBL:KJB96543.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3565_20
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18374..19042
DNA (669bp) protein (223aa)
Ectoine/hydroxyectoine ABC transporter, permease protein EhuD n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BX95_NITHN
ectoine/hydroxyectoine ABC transporter permease EhuD; K02029 polar amino acid transport system permease protein
Ectoine/hydroxyectoine ABC transporter, permease protein EhuD {ECO:0000313|EMBL:ADE15778.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_1000_bf_scaffold_3565_21
Bacillus thermoamylovorans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19488..19748
DNA (261bp) protein (87aa)
aapP; general L-amino acid transport ATP-binding protein AapP; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
arginine ABC transporter ATP-binding protein n=1 Tax=Thermus scotoductus RepID=UPI0003743B56
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:CEE02183.1}; TaxID=35841 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus thermoamylovorans.;"
SCNpilot_expt_1000_bf_scaffold_3565_22
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19863..21113
DNA (1251bp) protein (417aa)
Threonine synthase {ECO:0000313|EMBL:EAR51292.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EAR51292.1};; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
L-threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CF35_9RHOB rbh
SCNpilot_expt_1000_bf_scaffold_3565_23
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21249..21626
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P120_AZOS1
hypothetical protein; K07567 TdcF protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74349.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_3565_24
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21651..22430)
DNA (780bp) protein (260aa)
ArsR family transcriptional regulator n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GCC5_9RHIZ
ArsR family transcriptional regulator {ECO:0000313|EMBL:ESZ58855.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3565_25
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22572..23438)
DNA (867bp) protein (289aa)
Putative AraC family transcriptional regulator n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KM19_RHISN
AraC family transcriptional regulator
4-hydroxyphenylacetate catabolism regulatory protein, AraC family {ECO:0000313|EMBL:CCE99689.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_3565_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23528..25120
DNA (1593bp) protein (531aa)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTP2_RHITR
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
4-hydroxyphenylacetate 3-monooxygenase oxygenase component {ECO:0000313|EMBL:AGB74582.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3565_27
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25096..25716
DNA (621bp) protein (207aa)
hpaC; flavin reductase-like, FMN-binding; K09024 flavin reductase [EC:1.5.1.-]
4-hydroxyphenylacetate 3-monooxygenase, reductase component {ECO:0000313|EMBL:CCE99687.1}; EC=1.14.13.3 {ECO:0000313|EMBL:CCE99687.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Flavin reductase-like, FMN-binding n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF55_RHIFH
SCNpilot_expt_1000_bf_scaffold_3565_28
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25593..26606)
DNA (1014bp) protein (338aa)
aldehyde dehydrogenase family protein; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:CCE99697.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CCE99697.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Aldehyde dehydrogenase family protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF65_RHIFH
SCNpilot_expt_1000_bf_scaffold_3565_29
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27138..28589)
DNA (1452bp) protein (484aa)
Uncharacterized amino-acid permease P7G5.06 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF64_RHIFH rbh
amino-acid permease P7G5.06 rbh
Uncharacterized amino-acid permease {ECO:0000313|EMBL:CCE99696.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_3565_30
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28885..29664
DNA (780bp) protein (260aa)
Transcriptional regulator, IclR family n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KM13_RHISN rbh
IclR family transcriptional regulator rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ACP23449.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Displaying items 1-30 of 38 in total

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