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SCNpilot_expt_1000_bf_scaffold_9396

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9396_1
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..510
DNA (510bp) protein (170aa)
UPI0003CE585F related cluster n=1 Tax=unknown RepID=UPI0003CE585F
Major facilitator transporter {ECO:0000313|EMBL:ESY83078.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_expt_1000_bf_scaffold_9396_2
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(542..775)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YJQ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX11838.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9396_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1024..1620)
DNA (597bp) protein (199aa)
Inositol monophosphatase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFD8_MESCW rbh
inositol monophosphatase rbh
Inositol monophosphatase {ECO:0000313|EMBL:ADV13478.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_9396_4
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1831..2727)
DNA (897bp) protein (299aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFD9_MESCW rbh
PP-loop domain-containing protein; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA rbh
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_9396_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2861..3478)
DNA (618bp) protein (206aa)
30S ribosomal protein S4 n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YJQ4_9RHIZ rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ribosomal protein S4, bacterial/organelle type rbh
SCNpilot_expt_1000_bf_scaffold_9396_6
unknown

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3800..3991
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9396_7
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4080..4268)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Mesorhizobium RepID=M5ER21_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX28393.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9396_8
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5442..5813
DNA (372bp) protein (124aa)
ribonuclease n=1 Tax=Rhizobium loti RepID=UPI00035D47FF
Ribonuclease II {ECO:0000313|EMBL:CDX39533.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
exoribonuclease R
SCNpilot_expt_1000_bf_scaffold_9396_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5949..6743)
DNA (795bp) protein (265aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] rbh
Glutamate racemase n=2 Tax=Rhizobium loti (strain MAFF303099) RepID=MURI_RHILO rbh
SCNpilot_expt_1000_bf_scaffold_9396_10
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6736..7620)
DNA (885bp) protein (295aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
RNA methyltransferase; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] rbh
RNA methyltransferase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A95E2 rbh
SCNpilot_expt_1000_bf_scaffold_9396_11
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7866..8753
DNA (888bp) protein (296aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
Isocitrate dehydrogenase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FR23_9RHIZ
isocitrate dehydrogenase, NADP-dependent
Displaying 11 items

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