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SCNpilot_expt_1000_bf_scaffold_5078

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5078_1
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..176
DNA (174bp) protein (58aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
glycoside hydrolase family protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
UPI0003CEE47C related cluster n=1 Tax=unknown RepID=UPI0003CEE47C
SCNpilot_expt_1000_bf_scaffold_5078_2
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

195..1037
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU39_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV07413.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein; K05896 segregation and condensation protein A rbh
SCNpilot_expt_1000_bf_scaffold_5078_3
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1034..1804
DNA (771bp) protein (257aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y4L6_MESOW rbh
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B rbh
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_5078_4
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1979..2197
DNA (219bp) protein (73aa)
Sec-independent protein translocase protein TatA n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=TATA_RHILO
tatA; twin-arginine translocation protein TatA; K03116 sec-independent protein translocase protein TatA
Sec-independent protein translocase protein TatA {ECO:0000255|HAMAP-Rule:MF_00236}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5078_5
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2208..2351)
DNA (144bp) protein (48aa)
Mlr1084 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LC6_RHILO
hypothetical protein
Mlr1084 protein {ECO:0000313|EMBL:BAB48537.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5078_6
unknown

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2790..2969
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5078_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2966..3454
DNA (489bp) protein (163aa)
Sec-independent protein translocase protein TatC n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LC7_RHILO
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Sec-independent protein translocase, TatC subunit; K03118 sec-independent protein translocase protein TatC
SCNpilot_expt_1000_bf_scaffold_5078_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3405..3812
DNA (408bp) protein (136aa)
Sec-independent protein translocase protein TatC n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LC7_RHILO
sec-independent protein translocase component; K03118 sec-independent protein translocase protein TatC
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5078_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4108..5412
DNA (1305bp) protein (435aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] rbh
UPI0003D04F91 related cluster n=1 Tax=unknown RepID=UPI0003D04F91 rbh
SCNpilot_expt_1000_bf_scaffold_5078_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5412..6170
DNA (759bp) protein (253aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
surE; stationary phase survival protein SurE (EC:3.1.3.2); K03787 5'-nucleotidase [EC:3.1.3.5] rbh
5'-nucleotidase SurE n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YD32_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5078_11
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6167..6826
DNA (660bp) protein (220aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] rbh
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|RuleBase:RU003802}; EC=2.1.1.77 {ECO:0000256|RuleBase:RU003802};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y4M2_MESOW rbh
SCNpilot_expt_1000_bf_scaffold_5078_12
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6982..8517
DNA (1536bp) protein (512aa)
UPI0003CE3A0B related cluster n=1 Tax=unknown RepID=UPI0003CE3A0B rbh
Peptigoglycan-binding protein LysM {ECO:0000313|EMBL:ESW80238.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
metalloendopeptidase-like membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_5078_13
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8673..9383)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKC5_MESCW
hypothetical protein; K06923
Uncharacterized protein {ECO:0000313|EMBL:ADV12624.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_5078_14
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9805..10143
DNA (339bp) protein (113aa)
SecYEG protein translocase auxillary subunit n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ET30_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESY74669.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_expt_1000_bf_scaffold_5078_15
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10195..10920
DNA (726bp) protein (242aa)
Probable protein-export membrane protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LD6_RHILO
bifunctional preprotein translocase subunit SecD/SecF; K12257 SecD/SecF fusion protein
Bifunctional preprotein translocase subunit SecD/SecF {ECO:0000313|EMBL:AID30528.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_5078_16
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10932..12662
DNA (1731bp) protein (577aa)
UPI0003D037A6 related cluster n=1 Tax=unknown RepID=UPI0003D037A6
Preprotein translocase subunit SecD {ECO:0000313|EMBL:ESZ25084.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
protein-export membrane protein SecD; K12257 SecD/SecF fusion protein
SCNpilot_expt_1000_bf_scaffold_5078_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13056..13895
DNA (840bp) protein (280aa)
hypothetical protein; K02291 phytoene synthase [EC:2.5.1.32] rbh
Mll1068 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LD8_RHILO rbh
Squalene/phytoene synthase {ECO:0000313|EMBL:CDX12258.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_5078_18
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13980..14414
DNA (435bp) protein (145aa)
UPI0003CEAF73 related cluster n=1 Tax=unknown RepID=UPI0003CEAF73
Uncharacterized protein {ECO:0000313|EMBL:ESY78732.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5078_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14414..15364
DNA (951bp) protein (317aa)
C-5 sterol desaturase {ECO:0000313|EMBL:CDX25664.1}; EC=1.3.-.- {ECO:0000313|EMBL:CDX25664.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YD42_9RHIZ rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5078_20
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15382..15891)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKD3_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV12632.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_5078_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15894..17303)
DNA (1410bp) protein (470aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Me
hypothetical protein (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] rbh
tRNA (Uracil-5-)-methyltransferase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FG94_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5078_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17950..18120)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGB8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX25655.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5078_23
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18138..18278)
DNA (141bp) protein (47aa)
Uncharacterized protein n=7 Tax=Mesorhizobium RepID=M5ET21_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESW88086.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5078_24
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18515..18826
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FLE1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14314.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
Displaying 24 items

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