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SCNpilot_expt_1000_bf_scaffold_5086

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5086_1
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..2666)
DNA (2664bp) protein (888aa)
multidrug transporter n=1 Tax=Rhizobium loti RepID=UPI00037852BA rbh
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:AID32200.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
acriflavin resistance protein; K07788 RND superfamily, multidrug transport protein MdtB
SCNpilot_expt_1000_bf_scaffold_5086_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2663..3559)
DNA (897bp) protein (299aa)
Secretion protein HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHG5_NITHX
Bradyrhizobium elkanii strain UASWS1015 Contig178, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48107.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
secretion protein HlyD; K07799 putative multidrug efflux transporter MdtA
SCNpilot_expt_1000_bf_scaffold_5086_3
unknown

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3698..3883
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5086_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4305..5231
DNA (927bp) protein (309aa)
Putative ABC transporter (ATP binding protein) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE75_9RHIZ rbh
Putative transporter subunit: ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX25132.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC-type multidrug transport system, ATPase component rbh
SCNpilot_expt_1000_bf_scaffold_5086_5
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5228..5989
DNA (762bp) protein (254aa)
sugar ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000377DA89 rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
permease, ABC-2-type transport system; K01992 ABC-2 type transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5086_6
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6100..8091)
DNA (1992bp) protein (664aa)
UPI0003CDF4CB related cluster n=1 Tax=unknown RepID=UPI0003CDF4CB rbh
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ESY62992.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein; K07093 rbh
SCNpilot_expt_1000_bf_scaffold_5086_7
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8438..8776
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FND2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX80402.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5086_8
unknown

Not on your lists

comp(8758..9066)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5086_9
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9237..9491
DNA (255bp) protein (85aa)
UPI0003CDF998 related cluster n=1 Tax=unknown RepID=UPI0003CDF998
membrane-associated phospholipid phosphatase
Phosphoesterase {ECO:0000313|EMBL:ESY93188.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_expt_1000_bf_scaffold_5086_10
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10022..11725
DNA (1704bp) protein (568aa)
Sulfate transporter family protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWU9_9RHIZ rbh
Sulfate transporter family protein {ECO:0000313|EMBL:CCV04136.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
sulfate permease-like transporter, MFS superfamily rbh
SCNpilot_expt_1000_bf_scaffold_5086_11
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11762..12370)
DNA (609bp) protein (203aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KE71_MESAW rbh
DNA-3-methyladenine glycosylase rbh
SCNpilot_expt_1000_bf_scaffold_5086_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12500..13141)
DNA (642bp) protein (214aa)
Putative transmembrane protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DE98_9RHIZ
Probable transmembrane protein {ECO:0000313|EMBL:CDP53300.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5086_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13285..14112
DNA (828bp) protein (276aa)
D-cysteine desulfhydrase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FPH6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDP53299.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
LytR/AlgR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5086_14
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14143..15084)
DNA (942bp) protein (314aa)
CHAD domain containing protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EYW1_9RHIZ rbh
CHAD domain containing protein {ECO:0000313|EMBL:CCV10307.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
CHAD domain containing protein rbh
SCNpilot_expt_1000_bf_scaffold_5086_15
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15081..15554)
DNA (474bp) protein (158aa)
Adenylate cyclase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y909_MESOW
adenylate cyclase
Adenylate cyclase {ECO:0000313|EMBL:ESY62979.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_5086_16
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15962..16336
DNA (375bp) protein (125aa)
UPI0003CF333B related cluster n=1 Tax=unknown RepID=UPI0003CF333B
TetR family transcriptional regulator {ECO:0000313|EMBL:ESY62978.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5086_17
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16387..17337
DNA (951bp) protein (317aa)
hemolysin secretion protein D n=1 Tax=Rhizobium loti RepID=UPI00036501CC rbh
Secretion protein HlyD family protein {ECO:0000313|EMBL:EHH12974.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
secretion protein HlyD family protein; K01993 HlyD family secretion protein rbh
SCNpilot_expt_1000_bf_scaffold_5086_18
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17863..18231
DNA (369bp) protein (123aa)
ABC transporter related protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y906_MESOW
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AEH85316.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_5086_19
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18228..19364
DNA (1137bp) protein (379aa)
mannose-1-phosphate guanyltransferase n=1 Tax=Rhizobium loti RepID=UPI000361EAA7 rbh
ABC transporter ATP-binding protein; K09686 antibiotic transport system permease protein rbh
ABC-2 type transporter family protein {ECO:0000313|EMBL:AID33532.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_5086_20
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19442..20419)
DNA (978bp) protein (326aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19] rbh
serine/threonine dehydratase n=1 Tax=Rhizobium loti RepID=UPI00037D3BB9 rbh
Pyridoxal-phosphate dependent enzyme family protein {ECO:0000313|EMBL:AID33533.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_5086_21
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20745..21068)
DNA (324bp) protein (108aa)
UPI0003CED62C related cluster n=1 Tax=unknown RepID=UPI0003CED62C
Uncharacterized protein {ECO:0000313|EMBL:ESY87870.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5086_22
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21236..22219
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y5E0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX13858.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5086_23
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22558..22902)
DNA (345bp) protein (115aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Rhizobium loti RepID=UPI00037772E6
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ESY34744.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
Antibiotic biosynthesis monooxygenase; K07145
SCNpilot_expt_1000_bf_scaffold_5086_24
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22899..23258)
DNA (360bp) protein (120aa)
UPI0003CF6ADF related cluster n=1 Tax=unknown RepID=UPI0003CF6ADF
NIPSNAP family containing protein {ECO:0000313|EMBL:CDX13844.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
NIPSNAP family containing protein
Displaying 24 items

View Taxonomy