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SCNpilot_expt_1000_bf_scaffold_5140

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5140_1
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1279)
DNA (1278bp) protein (426aa)
PTSINtr with GAF domain, PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
UPI0003CF71F8 related cluster n=1 Tax=unknown RepID=UPI0003CF71F8
Peptidase {ECO:0000313|EMBL:ESY76320.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_5140_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1360..1848)
DNA (489bp) protein (163aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CFD533 related cluster n=1 Tax=unknown RepID=UPI0003CFD533
aspartate kinase, monofunctional class
SCNpilot_expt_1000_bf_scaffold_5140_3
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1845..2600)
DNA (756bp) protein (252aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4]
Aspartate kinase n=2 Tax=Mesorhizobium RepID=V7GKT6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5140_4
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2809..4953)
DNA (2145bp) protein (715aa)
UPI0003D03A0E related cluster n=1 Tax=unknown RepID=UPI0003D03A0E rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ23413.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5140_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5150..5899
DNA (750bp) protein (250aa)
ubiquinone biosynthesis O-methyltransferase (EC:2.1.1.64) rbh
UPI0003CE2A0F related cluster n=1 Tax=unknown RepID=UPI0003CE2A0F rbh
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_5140_6
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5960..6448)
DNA (489bp) protein (163aa)
Mll3444 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98G86_RHILO rbh
hypothetical protein rbh
Mll3444 protein {ECO:0000313|EMBL:BAB50330.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5140_7
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6479..7603)
DNA (1125bp) protein (375aa)
Mll3445 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98G85_RHILO rbh
hypothetical protein rbh
Mll3445 protein {ECO:0000313|EMBL:BAB50331.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5140_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7712..8314
DNA (603bp) protein (201aa)
Mlr3446 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98G84_RHILO rbh
hypothetical protein rbh
Mlr3446 protein {ECO:0000313|EMBL:BAB50332.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5140_9
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8377..9267)
DNA (891bp) protein (297aa)
UPI0003CEA684 related cluster n=1 Tax=unknown RepID=UPI0003CEA684 rbh
EamA-like transporter family rbh
Transporter {ECO:0000313|EMBL:ESY98032.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_5140_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9355..9558
DNA (204bp) protein (68aa)
Regulatory protein (MarR-family) n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98G82_RHILO
MarR family transcriptional regulator
Regulatory protein (MarR-family) {ECO:0000313|EMBL:BAB50334.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5140_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9585..9833
DNA (249bp) protein (83aa)
MarR family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3L3_9RHIZ
MarR family transcriptional regulator {ECO:0000313|EMBL:EHH13721.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5140_12
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9870..10346)
DNA (477bp) protein (159aa)
Putative transcriptional regulator, MarR family n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PSX1_9RHIZ
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AIC27185.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
putative transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_5140_13
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10534..11694
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002DA351D rbh
oxidoreductase rbh
Putative oxidoreductase {ECO:0000313|EMBL:AFO88386.1}; TaxID=383629 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter gallaeciensis (strain 2.10) (Roseobacter gallaeciensis).;"
SCNpilot_expt_1000_bf_scaffold_5140_14
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11719..12144)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGK8_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB44136.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_5140_15
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12141..13001)
DNA (861bp) protein (287aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F212_9RHIZ rbh
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:CCV11377.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
nitrilase, nitrilase 1 like protein
SCNpilot_expt_1000_bf_scaffold_5140_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13013..13279)
DNA (267bp) protein (89aa)
UPI0003CE27CF related cluster n=1 Tax=unknown RepID=UPI0003CE27CF
Glutaredoxin 3 {ECO:0000313|EMBL:CDX49291.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Glutaredoxin, GrxC family
SCNpilot_expt_1000_bf_scaffold_5140_17
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13307..13579)
DNA (273bp) protein (91aa)
Amidophosphoribosyltransferase n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G4X3_9RHIZ
Amidophosphoribosyltransferase {ECO:0000313|EMBL:ESY22545.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5140_18
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14160..15026
DNA (867bp) protein (289aa)
SAM-dependent methyltransferase n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GKS9_9RHIZ rbh
SAM-dependent methyltransferase {ECO:0000313|EMBL:ESY34096.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
type 11 methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_5140_19
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15057..15239)
DNA (183bp) protein (61aa)
UPI0003CE072E related cluster n=1 Tax=unknown RepID=UPI0003CE072E
PilA {ECO:0000313|EMBL:ESW82563.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Flp pilus assembly protein, pilin Flp
SCNpilot_expt_1000_bf_scaffold_5140_20
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15333..15638)
DNA (306bp) protein (102aa)
Mll3458 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98G75_RHILO
hypothetical protein
Mll3458 protein {ECO:0000313|EMBL:BAB50341.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5140_21
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15777..16196)
DNA (420bp) protein (140aa)
NTP pyrophosphohydrolase n=3 Tax=Mesorhizobium RepID=V7F018_9RHIZ
NTP pyrophosphohydrolase {ECO:0000313|EMBL:ESX42052.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
mutator MutT protein
SCNpilot_expt_1000_bf_scaffold_5140_22
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16193..16963)
DNA (771bp) protein (257aa)
UPI0003CF620B related cluster n=1 Tax=unknown RepID=UPI0003CF620B rbh
Acetyltransferase {ECO:0000313|EMBL:ESY96567.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
acetyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_5140_23
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16975..18216)
DNA (1242bp) protein (414aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] rbh
UPI0003CDD0AB related cluster n=1 Tax=unknown RepID=UPI0003CDD0AB rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_expt_1000_bf_scaffold_5140_24
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18332..18577)
DNA (246bp) protein (82aa)
UPI0003CDFC92 related cluster n=1 Tax=unknown RepID=UPI0003CDFC92
AfpU {ECO:0000313|EMBL:ESW82557.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5140_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18684..19289
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F5E7_9RHIZ rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCV11368.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5140_26
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19273..20253
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F203_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV11367.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_5140_27
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20320..21237)
DNA (918bp) protein (306aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] rbh
UPI0003CE2FAE related cluster n=1 Tax=unknown RepID=UPI0003CE2FAE rbh
SCNpilot_expt_1000_bf_scaffold_5140_28
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21487..22506
DNA (1020bp) protein (340aa)
Protein translocase subunit SecA n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y378_MESOW
preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying 28 items

View Taxonomy