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SCNpilot_expt_1000_bf_scaffold_5148

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5148_1
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25..654)
DNA (630bp) protein (210aa)
UPI0003CFBC3E related cluster n=1 Tax=unknown RepID=UPI0003CFBC3E rbh
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
cytochrome oxidase assembly factor rbh
SCNpilot_expt_1000_bf_scaffold_5148_2
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(662..829)
DNA (168bp) protein (56aa)
UPI0003CEB72D related cluster n=1 Tax=unknown RepID=UPI0003CEB72D
Protoheme IX farnesyltransferase {ECO:0000313|EMBL:ESY73331.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5148_3
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(826..1134)
DNA (309bp) protein (103aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
UPI0003CF0CC7 related cluster n=1 Tax=unknown RepID=UPI0003CF0CC7
SCNpilot_expt_1000_bf_scaffold_5148_4
unknown

Not on your lists

1384..2001
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5148_5
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1863..2270)
DNA (408bp) protein (136aa)
UPI0003D01505 related cluster n=1 Tax=unknown RepID=UPI0003D01505
cytochrome c oxidase, subunit I
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:ESY98497.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_5148_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2731..2961
DNA (231bp) protein (77aa)
Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Lumbricus festivus RepID=I6MZA1_9ANNE
uncharacterized LOC100425232
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_5148_7
Nephotettix virescens, Nephotettix, Hemiptera, Neoptera, Arthropoda, Metazoa

Not on your lists

3047..3262
DNA (216bp) protein (72aa)
Cytochrome oxidase subunit I (Fragment) n=1 Tax=Onuphis pseudoiridescens RepID=D7NNG5_9ANNE
Cytochrome oxidase subunit 1 {ECO:0000313|EMBL:CDY79949.1}; Flags: Fragment;; TaxID=1032906 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Euhemiptera; Membracoidea; Cicadellidae; Deltocephalinae; Nephotettix.;" source="Nephotettix virescens.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5148_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3509..4402)
DNA (894bp) protein (298aa)
cytochrome C oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] rbh
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
Cytochrome c oxidase subunit 2 n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q985X2_RHILO rbh
SCNpilot_expt_1000_bf_scaffold_5148_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4781..5311
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FJR5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV12394.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5148_10
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5462..5851
DNA (390bp) protein (130aa)
Putative Zn-dependent protease-like protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRW2_MESAW
Putative peptidase TldD {ECO:0000313|EMBL:CDX18274.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
putative Zn-dependent protease-like protein
SCNpilot_expt_1000_bf_scaffold_5148_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5970..6848
DNA (879bp) protein (293aa)
Peptidase U62 modulator of DNA gyrase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKM4_9RHIZ
Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:EHH03709.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
putative Zn-dependent protease-like protein
SCNpilot_expt_1000_bf_scaffold_5148_12
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7081..7308
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX40779.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_expt_1000_bf_scaffold_5148_13
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7429..7638)
DNA (210bp) protein (70aa)
Membrane protein n=3 Tax=Mesorhizobium RepID=V7ERZ2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX38284.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5148_14
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7635..8390)
DNA (756bp) protein (252aa)
Putative membrane protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KDI9_MESAW rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:AGB43076.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_5148_15
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8422..9465)
DNA (1044bp) protein (348aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:CDX38278.1}; EC=3.6.3.31 {ECO:0000313|EMBL:CDX38278.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Putrescine transport ATP-binding protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036BD2CD rbh
SCNpilot_expt_1000_bf_scaffold_5148_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9462..11291)
DNA (1830bp) protein (610aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003712102 rbh
Putative Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX38276.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC-type Fe3+ transport system, permease component
SCNpilot_expt_1000_bf_scaffold_5148_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11305..11679)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E01A2
Putative Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDX38273.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC-type Fe3+ transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_5148_18
unknown

Not on your lists

11924..12232
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5148_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12351..12752)
DNA (402bp) protein (134aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J832_AGRRK
transcriptional regulator protein
Transcriptional regulator {ECO:0000313|EMBL:KEA06052.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_5148_20
unknown

Not on your lists

12907..13374
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5148_21
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13398..14639)
DNA (1242bp) protein (414aa)
Putative enzyme {ECO:0000313|EMBL:CDX18285.1}; EC=2.1.1.- {ECO:0000313|EMBL:CDX18285.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
(Uracil-5)-methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
Putative enzyme n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHM2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5148_22
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14636..15400)
DNA (765bp) protein (255aa)
Hemolysin n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HB15_9RHIZ rbh
Hemolysin {ECO:0000313|EMBL:ESZ47954.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
putative rRNA methylase rbh
SCNpilot_expt_1000_bf_scaffold_5148_23
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15546..15947
DNA (402bp) protein (134aa)
Aldehyde-activating protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GUN9_9RHIZ
Aldehyde-activating protein {ECO:0000313|EMBL:ESZ02281.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5148_24
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15981..16148)
DNA (168bp) protein (56aa)
UPI0003CDF905 related cluster n=1 Tax=unknown RepID=UPI0003CDF905
Uncharacterized protein {ECO:0000313|EMBL:ESY98506.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_5148_25
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16409..17209)
DNA (801bp) protein (267aa)
deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T825_MESCW
Displaying 25 items

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