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SCNpilot_expt_1000_bf_scaffold_5233

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5233_1
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..773)
DNA (771bp) protein (257aa)
Inositol 2-dehydrogenase {ECO:0000313|EMBL:CDX17098.1}; EC=1.1.1.18 {ECO:0000313|EMBL:CDX17098.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Putative dehydrogenase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIY1_MESAW rbh
putative dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_5233_2
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(834..1652)
DNA (819bp) protein (273aa)
ABC-type sugar transport system, permease component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJT9_MESAW rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX17090.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ABC-type sugar transport system, permease component rbh
SCNpilot_expt_1000_bf_scaffold_5233_3
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1649..2554)
DNA (906bp) protein (302aa)
UPI0003CEA501 related cluster n=1 Tax=unknown RepID=UPI0003CEA501 rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX17077.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
permease component of ABC-type sugar transporter rbh
SCNpilot_expt_1000_bf_scaffold_5233_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2554..3867)
DNA (1314bp) protein (438aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KMR7_MESAW rbh
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDX16557.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ABC-type sugar transport system, periplasmic component rbh
SCNpilot_expt_1000_bf_scaffold_5233_5
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3864..4925)
DNA (1062bp) protein (354aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:CDX16554.1}; EC=3.6.3.20 {ECO:0000313|EMBL:CDX16554.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
UPI0003CE10DA related cluster n=1 Tax=unknown RepID=UPI0003CE10DA rbh
ATPase component of ABC-type sugar transporter rbh
SCNpilot_expt_1000_bf_scaffold_5233_6
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4949..5860)
DNA (912bp) protein (304aa)
Rhizopine catabolism protein MocC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTX2_9RHIZ rbh
Rhizopine catabolism protein MocC {ECO:0000313|EMBL:CDX17033.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
sugar phosphate isomerase/epimerase rbh
SCNpilot_expt_1000_bf_scaffold_5233_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7211..7855
DNA (645bp) protein (215aa)
UPI0003CF1BDD related cluster n=1 Tax=unknown RepID=UPI0003CF1BDD
Putative rhizopine catabolism regulatory protein mocR {ECO:0000313|EMBL:CDX16548.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
transcriptional regulator with HTH domain and aminotransferase domain
SCNpilot_expt_1000_bf_scaffold_5233_8
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7929..8657)
DNA (729bp) protein (243aa)
IclR helix-turn-helix domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XA07_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDX33085.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Transcriptional regulator, IclR family
SCNpilot_expt_1000_bf_scaffold_5233_9
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8919..9683)
DNA (765bp) protein (255aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:KIG01746.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KIG01746.1};; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
short-chain dehydrogenase n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002E6E316
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_5233_10
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9970..11232
DNA (1263bp) protein (421aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ERQ1_9RHIZ
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:CCV07539.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5233_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11257..12783
DNA (1527bp) protein (509aa)
ABC transporter related n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU37_9RHIZ
ABC transporter related {ECO:0000313|EMBL:CCV07540.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_5233_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12789..13103
DNA (315bp) protein (105aa)
Ribose ABC transporter permease protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QNV7_9CYAN
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCV07541.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
rbsC; ribose ABC transporter permease protein
Displaying 12 items

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