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SCNpilot_expt_1000_bf_scaffold_5902

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5902_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..422
DNA (420bp) protein (140aa)
LysR family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3V8_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDX51734.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5902_2
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(451..1275)
DNA (825bp) protein (275aa)
Probable O-methyltransferase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98I98_RHILO rbh
O-methyltransferase rbh
Probable O-methyltransferase {ECO:0000313|EMBL:BAB49618.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5902_3
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1344..2543)
DNA (1200bp) protein (400aa)
Divalent metal cation transporter MntH n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHE0_MESAW
natural resistance-associated macrophage protein metal ion transporter NRAMP
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_5902_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3125..3499
DNA (375bp) protein (125aa)
UPI0003CE302D related cluster n=1 Tax=unknown RepID=UPI0003CE302D
DNA-binding transcriptional regulator of mntH {ECO:0000313|EMBL:CDX43090.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
iron dependent repressor; K11924 DtxR family transcriptional regulator, manganese transport regulator
SCNpilot_expt_1000_bf_scaffold_5902_5
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3604..3792
DNA (189bp) protein (63aa)
Mll2495 protein n=2 Tax=Rhizobium loti RepID=Q98IA2_RHILO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AID31917.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_5902_6
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3828..4730)
DNA (903bp) protein (301aa)
Putative polysaccharide deacetylase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TI84_9RHIZ
Putative polysaccharide deacetylase {ECO:0000313|EMBL:ESR25713.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
polysaccharide deacetylase protein
SCNpilot_expt_1000_bf_scaffold_5902_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4991..5290
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEI7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV15697.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein; K07054
SCNpilot_expt_1000_bf_scaffold_5902_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5287..5916
DNA (630bp) protein (210aa)
flagellin biosynthesis protein FlgM n=1 Tax=Rhizobium loti RepID=UPI00035DE7A4
Uncharacterized protein {ECO:0000313|EMBL:CDX24227.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K07054
SCNpilot_expt_1000_bf_scaffold_5902_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6231..7499
DNA (1269bp) protein (423aa)
Major facilitator superfamily MFS_1 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FH85_9RHIZ rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:CDX43081.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
arabinose efflux permease family protein rbh
SCNpilot_expt_1000_bf_scaffold_5902_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7597..8823)
DNA (1227bp) protein (409aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] rbh
UPI0003CEA1D8 related cluster n=1 Tax=unknown RepID=UPI0003CEA1D8 rbh
SCNpilot_expt_1000_bf_scaffold_5902_11
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9234..9683
DNA (450bp) protein (150aa)
Mll2487 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IA8_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX31133.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5902_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9720..10715)
DNA (996bp) protein (332aa)
alcohol dehydrogenase; K00001 alcohol dehydrogenase [EC:1.1.1.1] rbh
Alcohol dehydrogenase superfamily, zinc-containing n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J102_RHOP2 rbh
Alcohol dehydrogenase superfamily, zinc-containing {ECO:0000313|EMBL:ABD05858.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Displaying 12 items

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