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SCNpilot_expt_1000_bf_scaffold_15104

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15104_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..183
DNA (183bp) protein (61aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036076F2
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF18171.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter ATP-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_15104_2
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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355..1269
DNA (915bp) protein (305aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00037154AB
Inner-membrane translocator {ECO:0000313|EMBL:EKF18170.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_15104_3
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1288..1740
DNA (453bp) protein (151aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI0003708537
Inner-membrane translocator {ECO:0000313|EMBL:EKF18169.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_15104_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2540..3010
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F76C7
ABC transporter {ECO:0000313|EMBL:EKF18168.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
braF; ABC transporter
SCNpilot_expt_1000_bf_scaffold_15104_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3004..3705
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003698834 rbh
Amino acid ABC transporter ATPase {ECO:0000313|EMBL:EKF18167.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_15104_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3692..4513
DNA (822bp) protein (274aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E5E56
SCNpilot_expt_1000_bf_scaffold_15104_7
unknown

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comp(4567..4791)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_15104_8
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5135..5917
DNA (783bp) protein (261aa)
hypothetical protein; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLT6_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJC49265.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_expt_1000_bf_scaffold_15104_9
Pseudomonas sp., Proteobacteria, Bacteria

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comp(6004..7194)
DNA (1191bp) protein (397aa)
6-aminohexanoate-dimer hydrolase {ECO:0000313|EMBL:BAA01524.1}; EC=3.5.1.46 {ECO:0000313|EMBL:BAA01524.1};; TaxID=306 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp.;"
6-aminohexanoate-dimer hydrolase n=1 Tax=Pseudomonas sp. RepID=Q59719_PSESP rbh
nylB; 6-aminohexanoate-dimer hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_15104_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7229..7459)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EB5C6
nylB upstream ORF
NylB upstream ORF {ECO:0000313|EMBL:AEH81374.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
Displaying 10 items

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