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SCNpilot_expt_1000_bf_scaffold_4084

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4084_1
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1242
DNA (1242bp) protein (414aa)
Putative sugar ABC transporter ATP-binding protein n=1 Tax=Octadecabacter antarcticus 307 RepID=M9RC58_9RHOB rbh
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETX13911.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
putative sugar ABC transporter ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4084_2
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1336..2733)
DNA (1398bp) protein (466aa)
lpdA3; dihydrolipoyl dehydrogenase LpdA (EC:1.8.1.4) rbh
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1423144 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter gallaeciensis DSM 26640.;"
UPI0003D6A8B4 related cluster n=1 Tax=unknown RepID=UPI0003D6A8B4 rbh
SCNpilot_expt_1000_bf_scaffold_4084_3
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2741..3271)
DNA (531bp) protein (177aa)
Dihydrolipoamide acetyltransferase n=2 Tax=Labrenzia RepID=U7FTV2_9RHOB
dihydrolipoyllysine-residue acetyltransferase-like protein
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_expt_1000_bf_scaffold_4084_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3621..5015)
DNA (1395bp) protein (465aa)
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinate-semialdehyde dehydrogenase (NADP+) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAY9_PELHB rbh
Succinate-semialdehyde dehydrogenase (NADP+) {ECO:0000313|EMBL:AEQ53625.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4084_5
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5070..6065)
DNA (996bp) protein (332aa)
Putative dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Octadecabacter antarcticus 307 RepID=M9R8L9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGF69520.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
putative dihydrolipoyllysine-residue acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4084_6
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6055..7050)
DNA (996bp) protein (332aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:AKI01851.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AKI01851.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
pyruvate dehydrogenase E1 component beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAZ1_PELHB rbh
SCNpilot_expt_1000_bf_scaffold_4084_7
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7061..8050)
DNA (990bp) protein (330aa)
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha n=1 Tax=Octadecabacter arcticus 238 RepID=M9RMF2_9RHOB rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEP68333.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha rbh
SCNpilot_expt_1000_bf_scaffold_4084_8
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8077..9378)
DNA (1302bp) protein (434aa)
Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP-specific) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAZ3_PELHB rbh
aminopeptidase rbh
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_expt_1000_bf_scaffold_4084_9
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9513..10319)
DNA (807bp) protein (269aa)
Putative short chain oxidoreductase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NRH2_9RHOB rbh
Shikimate 5-dehydrogenase {ECO:0000313|EMBL:ETX29401.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
putative sorbitol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4084_10
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10331..12148)
DNA (1818bp) protein (606aa)
UPI0003D6C164 related cluster n=1 Tax=unknown RepID=UPI0003D6C164 rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEP68330.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
sugar ABC transporter, extracellular solute-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4084_11
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12349..13299
DNA (951bp) protein (317aa)
sugar transporter n=1 Tax=Amorphus coralli RepID=UPI00037671A2 rbh
Sugar transporter {ECO:0000313|EMBL:KEP68329.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
putative sugar ABC transporter periplasmatic binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4084_12
Grimontia hollisae, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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13562..14410
DNA (849bp) protein (283aa)
Ribose ABC transport system permease protein RbsC n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IA76_GRIHO rbh
Ribose ABC transport system permease protein RbsC {ECO:0000313|EMBL:EEY70794.1}; TaxID=675812 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia.;" source="Grimontia hollisae CIP 101886.;"
sugar ABC transporter permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4084_13
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14599..14970
DNA (372bp) protein (124aa)
sugar ABC transporter permease n=1 Tax=Marinobacterium rhizophilum RepID=UPI000370FB2B
Ribose ABC transporter {ECO:0000313|EMBL:KEP68326.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
ABC-type transporter for ribose/xylose/arabinose/galactoside systems, permease
Displaying 13 items

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