ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4552

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4552_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142..546)
DNA (405bp) protein (135aa)
UPI0003CF3ADF related cluster n=1 Tax=unknown RepID=UPI0003CF3ADF
DNA-binding protein {ECO:0000313|EMBL:ESW79225.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein; K07062
SCNpilot_expt_1000_bf_scaffold_4552_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(543..776)
DNA (234bp) protein (78aa)
AbrB/SpoV domain-containing protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S922_RHIET
AbrB/SpoV domain-containing protein
AbrB/SpoV domain-containing protein {ECO:0000313|EMBL:AGS26370.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_4552_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

980..2884
DNA (1905bp) protein (635aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] rbh
DEAD/DEAH box helicase domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THV4_MESCW rbh
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADV10099.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_4552_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2965..3648)
DNA (684bp) protein (228aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0P0_STAND rbh
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADH91361.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_4552_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3837..4694)
DNA (858bp) protein (286aa)
Extracellular solute-binding protein family 3 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0P1_STAND rbh
family 3 extracellular solute-binding protein rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADH91362.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_4552_6
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4960..5697
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YB68_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX26012.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4552_7
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..6256)
DNA (504bp) protein (168aa)
UPI0003CFBF2F related cluster n=1 Tax=unknown RepID=UPI0003CFBF2F
GCN5 family acetyltransferase {ECO:0000313|EMBL:ESZ18594.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_4552_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6279..7382)
DNA (1104bp) protein (368aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI00036B7213 rbh
SCNpilot_expt_1000_bf_scaffold_4552_9
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7564..7914)
DNA (351bp) protein (117aa)
UPI0003CEBC04 related cluster n=1 Tax=unknown RepID=UPI0003CEBC04
Glyoxalase {ECO:0000313|EMBL:ESY49897.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_4552_10
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7923..8306)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJJ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV04350.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_4552_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8460..8861
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F254_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV10565.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4552_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8858..9514
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEX3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV10564.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4552_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9535..10455)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F312_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESW68427.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4552_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10528..11133)
DNA (606bp) protein (202aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THU7_MESCW rbh
SCNpilot_expt_1000_bf_scaffold_4552_15
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11293..11613
DNA (321bp) protein (107aa)
UPI0003CF1BA8 related cluster n=1 Tax=unknown RepID=UPI0003CF1BA8
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:CDX26029.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4552_16
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11610..12056
DNA (447bp) protein (149aa)
ATPase n=1 Tax=Rhizobium loti RepID=UPI000374DF10
Activator of Hsp90 ATPase homolog 1-like family protein {ECO:0000313|EMBL:AID33390.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4552_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12101..12589
DNA (489bp) protein (163aa)
UPI0003CEB6E9 related cluster n=1 Tax=unknown RepID=UPI0003CEB6E9
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:CDX38216.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Activator of Hsp90 ATPase 1 family protein
SCNpilot_expt_1000_bf_scaffold_4552_18
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12633..13799)
DNA (1167bp) protein (389aa)
FAD-dependent oxidoreductase domain-containing protein 1 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F2J9_9RHIZ rbh
FAD-dependent oxidoreductase domain-containing protein 1 {ECO:0000313|EMBL:CCV10561.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4552_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13852..15429)
DNA (1578bp) protein (526aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CFC109 related cluster n=1 Tax=unknown RepID=UPI0003CFC109 rbh
ATPase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_4552_20
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15417..16112)
DNA (696bp) protein (232aa)
UPI0003D044D0 related cluster n=1 Tax=unknown RepID=UPI0003D044D0 rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:ESZ04148.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
winged helix family two component transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_4552_21
unknown

Not on your lists

comp(16367..17668)
DNA (1302bp) protein (434aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4552_22
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18060..18557
DNA (498bp) protein (166aa)
LacI family transcriptional regulator n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FW02_RHIML
LacI family transcriptional regulator {ECO:0000313|EMBL:CDX29448.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein; K02529 LacI family transcriptional regulator
Displaying 22 items

View Taxonomy